Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1285 ATGCCCCCAATGACACCTTCGCGGGTGACAGGAGGGTTAACCCAATCATCTTCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCACAGAGTGTAGTTAACACTCACTTAAGCTCATCAATTGTTAACTCGTCTAGCACAGTTACGGGAGCCCGTCGAACAAACCTGGGTCCAGTTTCTGGGGATATTAATAATGCAGTTTTGAACAGTGTGGCGAACTCAGCACCAAGTGTCGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCCCTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCCAGTGTTAATACGGACTCATACTTACGATTACCTGCCTCACCCATGTCATTTACATCAAATAATATTAGTATTTCTGGCTCATCAGTGATTGATGGGTCCTCTGTAGTGCAACAGAGCACTCATCAAGATCAGAATCCTCAACAATTGCAGCAGAATCAGCAGCAGCTGCAGGGTGCTTCAAGTGCTACATCGTTGCCTGCATCTCAAACTGGCCCCTCTTCCCTCCATATGGGTGCACATGTCCCTGGGTCTTTCATGCATGATCCAAATAATGTATCTCAGCTGTCAAAGAAACCTAGACTGGATATCAAACAGGAAGATATAATGCAGCAGCATCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTGCAGGGTCGTAATCCACAGTTACAGGCTTTACTTCAACAACAGCAGAGACTGAGACAACAGCAAATCTTTCAGTCAATGCCCCAATTACAGCGAGTGCACTTGCAGCAACAACAGCAACAGCAGCAGCAACAACAACAACAACAAATGCAATTGAGGCAGCAATTGCAGCAACAAGTGATGCAGCCCTCTTCTGCTGTCAAGCGCCCATGTGACAATGGTGTCAGTGGGGTTTGTGCTCGTCGACTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGTATTGCTTATTGGAGAAAATTTGTGGCTGAATACTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCGTTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCCCAAGCAGCTACGGATGCATGGCAATGTGACATATGTGGTTGTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCGAGACTTAATGAAATCAAATTTGGCGGTGGTGTGATTGATGAACTTTTATTTCTGGACTTGCCACGTGAAATAAGATTTTCTTCTGGTGCGATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGAGTTGTTCGTGAAGGTCAACTACGCATCATATTCACTCAAGATTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGCGGCATGAAGAGCTTCTCCCTCGAAGGTTGGTTGCACCACCGGTCAACCAATTAGTACATGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGAGCCGATGGGGTTTCTCAGCAAGATTTGCAAGCTAACAGCAACATGGTATTGACAGCAGGACGCCAGCTTGCAAAGATTTTGGAGTTGCAATCGCTTAATGACTTGGGTTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCGGAGGTTGTCAACAGCATGAAAGACCTAATAGATATCTGTGCAGAACACAGAGTTGGGGCAATAGAGTGTTTGAAAAATTATCCTCTACTAACAACAGCCTCAAAGCTCCAGATGCAAAAGATGCAGGAAATGGAGCAGATGGCAAATGTTCATGGTCTGCCAACTGATAGAAACACACTCAATAAGCTGATGGCAATGAATCCTGGATTGAACAACCACATAAACAGTACTCGTAATATGGTTAATCGTGGGACAGCCCATTTAGCTCTTACCAACTACCAAAATATTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGATCCCTTCAGCGAGAAGGATCCTCATTCAATAATTCGAACCTGAGTCCCTCTTCCGCTTTGCAAGGAGCTGGTCCTTCTTTAATTCCAGGCTCAATGCAAAACTCGCCTGTTGGTGGATTCCCAGGTTCCCATTTACCACCACAGCAGCAACTCCTTCAACAGCCCACATTAAGTGCAAATGGTTTACTGCAACAAAATCATTCACAGGGGTCCCAAGGAAATCAATCTCTGCAGCAGCAGCAGATGATCCACCAACTGGTGCAGGAAATGTCAAATAACAATGGGGGAATGCAATCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATATGGCAAAAAATGCACTGAGTTTTGGGGGCCATACTCCATCCTTAAGTGGAGGTCCTGTCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACAGCTTCAAACAGTGATTCTTCTGCAGCTGGTGGCAACAATGGATTCAACCCAAGAACATCTGATATGCCACAAAGTCTACATTTGCAAGGTATGGGTCAGGATATTGGCCCTGAGTTCGCGGATAGCGCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTGGCTGGAAGGCATGA 2580 0.443 MPPMTPSRVTGGLTQSSSHSGIFFQGDGQSQSVVNTHLSSSIVNSSSTVTGARRTNLGPVSGDINNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVIDGSSVVQQSTHQDQNPQQLQQNQQQLQGASSATSLPASQTGPSSLHMGAHVPGSFMHDPNNVSQLSKKPRLDIKQEDIMQQHQVIQQILQRQDSMQLQGRNPQLQALLQQQQRLRQQQIFQSMPQLQRVHLQQQQQQQQQQQQQQMQLRQQLQQQVMQPSSAVKRPCDNGVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYNNVGHHALGVFPQAATDAWQCDICGCKSGRGFEATYEVLPRLNEIKFGGGVIDELLFLDLPREIRFSSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPPVNQLVHVAQKCQSTIAESGADGVSQQDLQANSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHRVGAIECLKNYPLLTTASKLQMQKMQEMEQMANVHGLPTDRNTLNKLMAMNPGLNNHINSTRNMVNRGTAHLALTNYQNILMRQNSMNSSPGSLQREGSSFNNSNLSPSSALQGAGPSLIPGSMQNSPVGGFPGSHLPPQQQLLQQPTLSANGLLQQNHSQGSQGNQSLQQQQMIHQLVQEMSNNNGGMQSQSLGGPNANGNMAKNALSFGGHTPSLSGGPVNVPGNNGPISRNNSFKTASNSDSSAAGGNNGFNPRTSDMPQSLHLQGMGQDIGPEFADSAFFNSDLDDNMGFGWKA* 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1285 859 MobiDBLite consensus disorder prediction 745 774 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 646 701 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 646 691 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 781 827 - -
Pvu4g1285 859 Pfam LIM-domain binding protein 310 570 IPR029005 -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 135 196 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 8 25 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 745 834 - -
Pvu4g1285 859 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 170 858 - -
Pvu4g1285 859 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 8 154 - -
Pvu4g1285 859 PANTHER LIM DOMAIN-BINDING PROTEIN 8 154 IPR029005 -
Pvu4g1285 859 PANTHER LIM DOMAIN-BINDING PROTEIN 170 858 IPR029005 -
Pvu4g1285 859 Coils Coil 263 287 - -
Pvu4g1285 859 MobiDBLite consensus disorder prediction 135 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1285 Pvu-Chr4 39098917 39105192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1285 305 579 C2H2 Transcription Factor Family AT1G43850 60.000 1.07e-106 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1285 - - pvu:PHAVU_004G121400g 1367.44