Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1277 ATGGAAGGTCGTAGTGAAATGGGGCTAATTGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGCTTAGGGATGATGACTATGAAAGTCGGTCAGAAAGTGATAATTTTGATGGTGGATCTGGTGATGATCAAGATGTTGGCGATGATCAACCACAAAGAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATCCAGGATCTTGAAGCATTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACTGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTGAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAAACACAATTGGAAAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTCAGAGCTGAGAATGGTGTGATGAAGGAAGCTTTGGCTAATCCTATATGTAACAACTGTGGTGGTCCAGCCATTCCTGGTCAAATTTCATTGGAGGAGCACCAGACAAGAATTGAAAACGCTCGTCTGAAGGATGAACTGAACCGAATATGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTCTCATCACTGGCCACTCCTATGTCTCTGCCACCCACAAATGCTGGTCTTGAACTTGCCATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCTTGCCAATTGGGTTTGAGGTTGGTGATGGAGGTTTAGGCTCCTCACCTGCAATGCAAAGTATGGCTGCTAGAGTACCAGTGGGAATGATGGGAAACGAAATCCATCTCGAAAGATCTATGCTTATAGATATTGCAATAAATGCTATGGATGAATTAGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATTAAGAGTTCTGATGGTAGGAACGAAGTACTAAACTGTGAGGAATACGCAGGAATATTTCCTACCTTTGTTGGAACAAAACCTGCTGGCTATGTAACTGAAGCTACAAGGGCTACTGGAGTTGTATTAGCCAGCAGTTTAGGCCTTGTGGAAACATTCATGGACGTGGATCGGTGGTCAGAGATGTTTTCATCTATGGTGGCTAGTGCTTGCACTTTGGATGTGTTATCTAGTGGCACAAATGGAACGAGAAATGGAGCTTTGCAAGTGATGTTAGCTGAATTTCAACTGCTTTCCCCACTGGTCCCTACTCGTCAATTGAGTTTCCTCAGGTTCTGCAAGCAACATGCTGAAGGTGTATGGGTTGTGGTTGATGTTTCTGTTGATATCATTCGTAATGCTGCCAATTCACATCCATTAATGAGTTGTAAGAGGCTTCCTTCTGGTTGTATCATTCAGGACATGACCAATGGTTTGTCCAAGATTACATGGGTTGAACATTCTCAGTATGATGAGGGTGTGATCCACCAACTTTGTCGTCCATTGGTTAGCTCTGGCATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGACTGCTTGGCAATCCTCATGTCCCCTCCTGCTCCATCTGATGACCCTATAGTCCTTAGCCAATCCAATAGGAGAAGCATCATGAAGCTGGCACAACGCATGACTGAGTGCTTCTGCTCAGGGATTTGTGCTTCATCTGCACGCAAGTGGGATGTTCTTCACATTGGTAGTCTGGCAGATGACATGAAAATCATGGCCAGGAAAACTGTGGACGACCCAAATGAGGCTCCTGGCATTGTATTGAGTGCTTCAACTTCTGTCTGGATGCCCGTTTCCCGACAAAGGGTGTTTGACTTCTTACGTAATGAACAGTTGAGAGGGGAATGGGACATGTTGTCCAAAGGTGGTCCAATGAAGGAGATGCTCCATGTTCCCAAAGGCCAAGAACATGGAAACTGTGTTTCCATCCTTCATTATGCTAATAACGAGAGTAACATGTTTTATCTGCAAGAGTCATGGACTGATGCATCTGGCTCAATGGTTGTATATTCTCCCATCAACATGCAATCTTTGAACATGATGATGAACTGTGGAGATTCATCATTTGTGGCTCTTCGTCCCTCAGGATTTGCTATTCTGCCAGACGGCCACTCCAACAACAGTGACAACAATGATGGTGGCGGTAGCTGTTTGCTAACAGTTGGATTACAAATGTTGCAGAATGACAACCAATCAGCCAAGTTCACAATGGAGTCAGTTCAAACTGTGAATTCCCTCCTTTCATGCACCATTCAAAAGGTCAAAGAAGCATTAGGTGTTTCATGA 2232 0.4418 MEGRSEMGLIGESFDTSNLLGRLRDDDYESRSESDNFDGGSGDDQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLATPMSLPPTNAGLELAIGRNGIGGSSNFGMPLPIGFEVGDGGLGSSPAMQSMAARVPVGMMGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCEEYAGIFPTFVGTKPAGYVTEATRATGVVLASSLGLVETFMDVDRWSEMFSSMVASACTLDVLSSGTNGTRNGALQVMLAEFQLLSPLVPTRQLSFLRFCKQHAEGVWVVVDVSVDIIRNAANSHPLMSCKRLPSGCIIQDMTNGLSKITWVEHSQYDEGVIHQLCRPLVSSGIGFGAQRWIASLLRQCDCLAILMSPPAPSDDPIVLSQSNRRSIMKLAQRMTECFCSGICASSARKWDVLHIGSLADDMKIMARKTVDDPNEAPGIVLSASTSVWMPVSRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQEHGNCVSILHYANNESNMFYLQESWTDASGSMVVYSPINMQSLNMMMNCGDSSFVALRPSGFAILPDGHSNNSDNNDGGGSCLLTVGLQMLQNDNQSAKFTMESVQTVNSLLSCTIQKVKEALGVS* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1277 743 SUPERFAMILY Bet v1-like 261 491 - -
Pvu4g1277 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 741 IPR042160 -
Pvu4g1277 743 SUPERFAMILY Bet v1-like 513 707 - -
Pvu4g1277 743 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pvu4g1277 743 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Pvu4g1277 743 Gene3D - 43 129 - -
Pvu4g1277 743 Coils Coil 107 127 - -
Pvu4g1277 743 SMART HOX_1 55 117 IPR001356 GO:0003677
Pvu4g1277 743 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Pvu4g1277 743 CDD START_ArGLABRA2_like 262 489 - -
Pvu4g1277 743 SMART START_1 267 491 IPR002913 GO:0008289
Pvu4g1277 743 MobiDBLite consensus disorder prediction 19 38 - -
Pvu4g1277 743 SUPERFAMILY Homeodomain-like 37 113 IPR009057 -
Pvu4g1277 743 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 741 - -
Pvu4g1277 743 MobiDBLite consensus disorder prediction 1 64 - -
Pvu4g1277 743 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pvu4g1277 743 CDD homeodomain 56 113 IPR001356 GO:0003677
Pvu4g1277 743 Pfam START domain 268 490 IPR002913 GO:0008289
Pvu4g1277 743 Gene3D - 267 474 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1277 Pvu-Chr4 39011533 39016040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1277 1 740 Homeobox Transcription Factor Family AT3G61150 53.150 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu4g1277 START 1.8e-44 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1277 K09338 - gmx:100784656 1215.29