Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1268 ATGGCTCAGCCGCCTCCGGTGGAACACAACACCGACTCCACCACCACCGCCTCTGCCGCTGCAGACTCACAGAGATCTATTCCAACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATTTCCTGGAACGACGACGGATCAACGTTCATCGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGTTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCTCGAACGATTGTTTCCGTCGAGGCGAGAAGCGCCTTCTGAGCGAAATTCAACGGCGGAAGATTTCGTTGCCGGCGCCGACTCCGTGTCTGACAGCGCCGGCAACGGTTGTTGTTCCGACGCCGATGCCGTTGACTGCGATACCGATCATATCCCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAACTCTTCACCGTCGCTCGCGCCGGCGGAGCTCGTCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAGTTGACCAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATATATGCTCTCATGTCAAATTACGCCAACGCCAACGGTAACACTAACGGGAACGGAAGTTACCAAACGGACGGCGGTGCTGGTGGCGCTCAGGGAAGTAGGGAGTCCGGCATGACGGCGTTGAAGCCGCTCGATTTGATGCCGACGAAACGGATCTCCGGTGAGGACGCGGCGGAGGTGATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGTTGTGAAGATTGTGGAGAAGAAGGTGGAGGAAAGAAAGATACGCTGCTGCGTTTGCATCACCCAGGTCCTGCGGACGTGAAACCTGAGCCGTTGGATTGCCAGAGCCATCGCGAGAATCAGGAAACGCCGTGGTTAAGTCAGTGTCACATAGCAAATCAGAGGGTGTGTAACTGA 1023 0.5474 MAQPPPVEHNTDSTTTASAAADSQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLSEIQRRKISLPAPTPCLTAPATVVVPTPMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELVDENERLRKENVQLTKELAEMRSLCNNIYALMSNYANANGNTNGNGSYQTDGGAGGAQGSRESGMTALKPLDLMPTKRISGEDAAEVMNPKLFGVAIGAKRAREGGGSCEDCGEEGGGKKDTLLRLHHPGPADVKPEPLDCQSHRENQETPWLSQCHIANQRVCN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1268 340 MobiDBLite consensus disorder prediction 1 24 - -
Pvu4g1268 340 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 325 IPR027725 -
Pvu4g1268 340 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 8 325 - -
Pvu4g1268 340 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Pvu4g1268 340 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu4g1268 340 Gene3D - 23 121 IPR036388 -
Pvu4g1268 340 Coils Coil 179 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1268 Pvu-Chr4 38764226 38766008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1268 5 340 HSF AT5G62020 47.592 3.82e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu4g1268 HSF_DNA-bind 9.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1268 K09419 - gmx:100812267 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1268 4 38764226 38766008 Pvu4g1268 4 38764226 38766008 ECH
Pvu4g1268 4 38764226 38766008 Pvu7g0693 7 6095460 6096981 PCT