Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1254 ATGAACACCATAGTGCTCCTCTTCCTCCTCGCATCATCACTTTCTGCAGTGTCCTGCACCTCACGCGCTCTATCCCCTTCACCGGCGACGCCTTATGGCCCATCCAACGACGACACCGTCCAAGCAACGCTTCTCATGTCAATCATCATCTTCGTTTCCGGCCTTGTCGTCACCGCATTATGCTCCATCTCCATCCGCTACGTATCCCTCCAAAACACCCTTCCGCAACCCACGATCGGACTCGACCCGCGCGTGCTCGCCGCGTGCCCCGTCATGTCCTACTCCGCACTCAAACTAAACCACCCCAAAGGGCAGAAAACCACCGCAATGCAATGCGCGGTGTGTCTGGCGGACTTCGCCGACGCCGACGCGCTCCGCCTGCTGCTGAAGTGCGGGCACGTGTTCCACACGCGCTGCATCGACGCGTGGCTGGCGGCGCACGTGACGTGCCCGGTGTGCCGCGGCGATGTGAGCGCGGAATCGAAAGGGGATACACGTGCGCGGCACGTGTTGGAGGAGGAAGATTCTGTGAGAGGCTTTGGTGTCCTTGTGAGGTCGCATTCCACGGGTCACTCTTTAGAGGGTTTTTCCATCAAATGTCCTGAGGAAGTGAAGAAGAAGGTTCTAGAAGATGGCGAGTGTGGAAATTCCACCACCATGAATCGTTCAGCCAGTTACGACGTCGTTTTGGGGATTGGAGAAAGGGGTGTTGGTAGCACTAATAATAATAATAACAATAATAATAATAACAGGTGGGTTTTGTTGACTTCAGTTATGAGAGAAGAGAGAGAGTTTGAAGGAATAACAAGAACATTTTTTGGTTGTGAAGTTTGA 834 0.5372 MNTIVLLFLLASSLSAVSCTSRALSPSPATPYGPSNDDTVQATLLMSIIIFVSGLVVTALCSISIRYVSLQNTLPQPTIGLDPRVLAACPVMSYSALKLNHPKGQKTTAMQCAVCLADFADADALRLLLKCGHVFHTRCIDAWLAAHVTCPVCRGDVSAESKGDTRARHVLEEEDSVRGFGVLVRSHSTGHSLEGFSIKCPEEVKKKVLEDGECGNSTTMNRSASYDVVLGIGERGVGSTNNNNNNNNNNRWVLLTSVMREEREFEGITRTFFGCEV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1254 277 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pvu4g1254 277 SUPERFAMILY RING/U-box 111 158 - -
Pvu4g1254 277 CDD RING-H2_EL5_like 111 154 - -
Pvu4g1254 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 5 158 - -
Pvu4g1254 277 SMART ring_2 112 153 IPR001841 -
Pvu4g1254 277 PANTHER RING FINGER DOMAIN-CONTAINING 5 158 - -
Pvu4g1254 277 Pfam Ring finger domain 111 154 IPR001841 -
Pvu4g1254 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 164 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1254 Pvu-Chr4 38485783 38486970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1254 4 254 Rapid Response to Elicitors AT3G05200 28.803 6.41e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1254 K10664 - gmx:102665105 248.825