Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1253 ATGCCTCAACCAAATCAATTTCACACCTTTCACTGCACTCTCTTTGCATTCTTCTCCCTCTTCTTGCTCCATCTTTCCACTGCACAAGCACAATCCTCCATGGAGCCTGTGCCCACATACATCACCCACCACAGCTGGGAGCCCTCCGTTGCCATCACAGTTGGAGCCATCATCTTCGCTCTTCTTGTCATGGCCATCCTCTCCATCTACCTCCGCAGGTGTGCTGAGGCACACATCATCATCACCACGCAGACCACCACCACACTCCCCTGCTCCTGCGCACAGGGGATCAACAGGGAACTCCTCAATACCTTCCCCACCCTCTTCTACTCCAACATCAAGGACCTCAAAAAAGGTGAAGAAACGCTCGAATGTGCTGTATGCTTGACGGATTTCTCAGACAAAGACTCCCTCAGACTCCTCCCCAAATGCAACCACGTGTTCCATCCTCAATGCATTGATTCCTGGCTCGCTTCCCACGTCACATGCCCAGTTTGCCGCGCGAATCTCAGCCAGGATCCGTGCCAGGTTGCCATAACAGTCCCTTCCCTTCATGATGAGGAAGTTTCCGGAAGTGAAGAAACTGTGGCAGAACCAAATCAAAACGCAAACGCAAACCATGCCGTGAATCAGGTTTGCGGTGGAAGTCCTACATTGAGTGATGATACAACCAAAACTGTGTATGTAAGTGAAGAACAACCTCCATCTCCTGATCTTCTTCCTGACTCAGACACCAACTCAAATTCTGTCACCGGTGATGGGGTGGTTGCTGTTGCTGAAAGGAACCTTTCCAGGTCGAATTCCACAGGGCATTCTCTTGTGGGTGTGGAGAGGTACACGTTGAGGTTACCGGAAGACGTGAGGAGGTACATTCTGGTGAACCATGGAAGGAGTGTTCAACGTTCTGCTAGTGTTAAGGGTACGTGTTGGAGTGATAGCGAAGAAAGTTACGCGAGGAAGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCGTTTGTGGCAAGCCATGGCTGA 1017 0.5123 MPQPNQFHTFHCTLFAFFSLFLLHLSTAQAQSSMEPVPTYITHHSWEPSVAITVGAIIFALLVMAILSIYLRRCAEAHIIITTQTTTTLPCSCAQGINRELLNTFPTLFYSNIKDLKKGEETLECAVCLTDFSDKDSLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLSQDPCQVAITVPSLHDEEVSGSEETVAEPNQNANANHAVNQVCGGSPTLSDDTTKTVYVSEEQPPSPDLLPDSDTNSNSVTGDGVVAVAERNLSRSNSTGHSLVGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGTCWSDSEESYARKRVEKRWVICTPPFVASHG* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1253 338 MobiDBLite consensus disorder prediction 208 231 - -
Pvu4g1253 338 Pfam Ring finger domain 124 167 IPR001841 -
Pvu4g1253 338 SMART ring_2 125 166 IPR001841 -
Pvu4g1253 338 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 314 - -
Pvu4g1253 338 CDD RING-H2_EL5_like 124 167 - -
Pvu4g1253 338 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pvu4g1253 338 MobiDBLite consensus disorder prediction 208 251 - -
Pvu4g1253 338 PANTHER RING FINGER DOMAIN-CONTAINING 10 314 - -
Pvu4g1253 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 173 IPR013083 -
Pvu4g1253 338 SUPERFAMILY RING/U-box 110 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1253 Pvu-Chr4 38452789 38454594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1253 20 292 Rapid Response to Elicitors AT3G05200 38.676 1.66e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1253 K10664 - gmx:100782532 443.351