Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1246 ATGGGCGTGAAGAACTTGTGGGACCTGCTGGAATCTTGCAAGAAAAGGGTTCCCCTTCACCATCTACAGAATAAGAGGGTGTGCGTGGACCTGTCGTGCTGGGTGGTGCAGCTTCACAGCGTGAGCAAGTCCCAAGCTTGCGTAAAGGATAACGTGTACCTCAGAGGGCTCTTTCACCGAATCAGGGCACTAATTGCGCTCAATTGCAGCATCGTCTTCGTCGCAGATGGATCAATTCCTGCCATAAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTAGCAAAAAGCGAAACAAACTTACAGAAAGTGACTTCGTTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATTAAAGAGGCTAAAATTTTGGGAATGGCTCTTGGAATTTCTTGTTTGAATGGTATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTCAGTCTAGATTCAGACATTTTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTCGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGGCTTGGAAGGGACTCATTGATTGCTCTTTCCTTGCTTCTTGGCAGTGACTATTATCAAGGGGTTCATGGTCTGGGTCCAGAGTCGGCTTGTGAGATAGTCAAATCAATTGGGGACCAATTTGTTCTTAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAGAGGCGGCAAGAATGATTTAGGGCGGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCTGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATACGTTTCAACGTACTAGACTCCAGCAGCTATGTGCTGAATTCTTTCTGTGGCCTTCGGATAAAACAGATGGGTATATTCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTCGAGTTGGACTGAACCTTCCTTTAGATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCATCAAGAGCCGAAAAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGTGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCCTGCCCTGAGAAGATTTTGGAGTTTGAGGAAAGAAAGGCTCAAAAGAAGAAACAAAATATTCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATCTCTTGCCGAGCTTGATCTAAAACTTCAGAACTTGTTGCTTGATAATAATTTGAGAGACCAAGCCAACTTCAATGCCTCTGATTCTTCAGAAAGGATATCAAGGATTACAACTCCTGTGGCTGAAGCTGATCTTAATACCCAAGATTTGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTCATGATACTAGCAACATATATAGTAGCAATAAGGTGGTTTCCACTATTGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATTCAATTTTTCCTCAAAATGTGAGCAATCAAGTGACCAAAACATCGAAGTGATTAATTTGAGTGATTCAGAAAATGACGTGTCTGTTGAACACAAGCAGAAAGCCAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1725 0.4064 MGVKNLWDLLESCKKRVPLHHLQNKRVCVDLSCWVVQLHSVSKSQACVKDNVYLRGLFHRIRALIALNCSIVFVADGSIPAIKLSTYRRRLNVGKEVAKSETNLQKVTSLRRNMGSEFSCMIKEAKILGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACEIVKSIGDQFVLKKFASEGLGWVKKRRGGKNDLGRDDNILEVINAYMKPKCHSADSDIVHKALAQYTFQRTRLQQLCAEFFLWPSDKTDGYILPSIAERDLRRFANLRLTSSRVGLNLPLDEIPVKCPVSEIIKSRKVQGRECYEVSWEGMVDGLETSIVPADLIESACPEKILEFEERKAQKKKQNIQKRRPKKKETNSSLAELDLKLQNLLLDNNLRDQANFNASDSSERISRITTPVAEADLNTQDLLHLSHDIEHTGLIHDTSNIYSSNKVVSTIGKNEIIDLLSPSPPKKFNFSSKCEQSSDQNIEVINLSDSENDVSVEHKQKAKELRLFLASIRNEIH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1246 574 CDD PIN_GEN1 2 200 - -
Pvu4g1246 574 Gene3D - 200 255 - -
Pvu4g1246 574 SUPERFAMILY Chromo domain-like 357 413 IPR016197 -
Pvu4g1246 574 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Pvu4g1246 574 SMART xpgineu 130 200 IPR006086 GO:0004518
Pvu4g1246 574 MobiDBLite consensus disorder prediction 409 429 - -
Pvu4g1246 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Pvu4g1246 574 Gene3D - 2 199 - -
Pvu4g1246 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 461 IPR006084 -
Pvu4g1246 574 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 461 - -
Pvu4g1246 574 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Pvu4g1246 574 SMART xpgn3 1 97 IPR006085 GO:0004518
Pvu4g1246 574 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Pvu4g1246 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pvu4g1246 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Pvu4g1246 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Pvu4g1246 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Pvu4g1246 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Pvu4g1246 574 ProSiteProfiles Chromo and chromo shadow domain profile. 356 417 IPR000953 -
Pvu4g1246 574 Gene3D - 355 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1246 Pvu-Chr4 38353254 38358559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1246 1 236 Core DNA Replication Machinery Family AT5G26680 25.581 4.17e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1246 K15338 - gmx:100806919 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1246 4 38353254 38358559 Pvu4g1246 4 38353254 38358559 ECH