Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1217 ATGGAAACCCCAACCACACTCACCTCCGTCCTCCACCACGTCGCCGCCAAGTTTCCCTCCCACCGAGCGCTCTCTGTCGCCACCAAATTTGACCTCACCCACTCCCGCCTCCAACAACTGGTGGAATCCGCCGCCCAACGGTTGCTCCTCGCCGGAATCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCGTCGAGTATGTTATCATGTTTCTAGCCGTTATTCGAGTGCGAGCCACAGCCGCGCCGTTGAACGCGGCTTACACAGCCGAAGAGTTCGAGTTTTATTTATCAGACTCCGAATCCAAGCTTCTCCTAACATCCTTAGAAGGAAACGACTCAGCTCAAGCCGCAGCTTCAAAACTCAAAATAGCTCACGCCACGGCTTCGATAACCAAAGCCGAGAATAACGAAGCCGAGCTTAGTCTCTCGCTGAGTCAGTCCGACTCGGTTGATTCGGTTGAGTCAGTGGTTAACGATCCCGATGACGTGGCGCTTTTCCTTCACACCTCCGGCACCACAAGCCGACCCAAGGGAGTGCCGCTCACCCAGCACAACCTGCTCTCTTCCGTACAGAACATTAAATCGGTGTACCGACTCACTGAGTCTGACTCGACGGTAATTGTGCTTCCGCTTTTTCATGTGCACGGTTTGATCGCGGGGTTGCTGAGTTCCCTCGTCGCCGGGGCGGCGGTGGCGCTGCCGGCGGCGGGGAGGTTCTCCGCCTCGACGTTCTGGAAAGACATGGTGAAGTACAGCGCCACGTGGTACACTGCGGTCCCCACTATACACCAGATTATACTGGACCGCCACGCGAACAACCCCGAACCGGTTTACCCGCGGCTCCGGTTCATCCGAAGTTGCAGCGCGTCGCTGGCACCGGCTATTTTGAGTAAACTCGAGGAGGCTTTCTGTGCGCCGGTATTGGAGGCTTATGCGATGACGGAAGCGTCGCATCTCATGGCTTCTAACCCTTTGCCGCAAGACGGGCCTCACAAGGCCGGGTCGGTTGGAAAGCCCGTGGGCCAGGAAATGGTTATTTTGGACCAAACGGGTCGGGTACAAGAGGCTGAAGTTAACGGAGAAGTCTGCATTCGTGGCCCCAATGTTACGAAGGGGTATAAAAATAACGTGGATGCTAATACGGCGGCGTTTCAGTTTGGTTGGTTCCACACCGGTGATGTTGGTTACTTGGATTCTGATGGGTATTTGCACCTCGTTGGTCGCATCAAGGAACTCATCAACCGTGGAGGCGAAAAGATATCACCAATAGAAGTTGATGCTGTTCTGCTTTCACATCCGGACATTGCTCAAGCAGTTGCTTTCGGAGTGGCTGATGCCAAGTATGGTGAAGAGATATATTGTGCGATCATCCCAAGAGAAGGATCAAACGTTGACGAGGCAGAGGTGCTAAGATATAGCAAGAACAATCTTGCATCCTTCAAAGTTCCCAAAAAGGTCTTCATTACTGATTCTTTGCCCAAGACTGCCACCGGAAAGATTTTGCGTCGTTTTGTGGCAGAACACTTTGTCTCCCAAATTTGA 1551 0.5364 METPTTLTSVLHHVAAKFPSHRALSVATKFDLTHSRLQQLVESAAQRLLLAGIKPGDVVALTFPNTVEYVIMFLAVIRVRATAAPLNAAYTAEEFEFYLSDSESKLLLTSLEGNDSAQAAASKLKIAHATASITKAENNEAELSLSLSQSDSVDSVESVVNDPDDVALFLHTSGTTSRPKGVPLTQHNLLSSVQNIKSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLVAGAAVALPAAGRFSASTFWKDMVKYSATWYTAVPTIHQIILDRHANNPEPVYPRLRFIRSCSASLAPAILSKLEEAFCAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMVILDQTGRVQEAEVNGEVCIRGPNVTKGYKNNVDANTAAFQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVADAKYGEEIYCAIIPREGSNVDEAEVLRYSKNNLASFKVPKKVFITDSLPKTATGKILRRFVAEHFVSQI* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1217 516 ProSitePatterns Putative AMP-binding domain signature. 169 180 IPR020845 -
Pvu4g1217 516 PANTHER ACYL-COA SYNTHETASE 1 516 - -
Pvu4g1217 516 CDD FACL_fum10p_like 19 510 IPR045310 GO:0016874
Pvu4g1217 516 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Pvu4g1217 516 Pfam AMP-binding enzyme 12 418 IPR000873 -
Pvu4g1217 516 Gene3D - 5 411 IPR042099 -
Pvu4g1217 516 PANTHER OXALATE--COA LIGASE-LIKE 1 516 - -
Pvu4g1217 516 Gene3D - 412 514 IPR045851 -
Pvu4g1217 516 SUPERFAMILY Acetyl-CoA synthetase-like 4 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1217 Pvu-Chr4 37669820 37673449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1217 5 516 Monolignol Biosynthesis Gene Families AT4G05160 29.167 8.52e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1217 K22133 - gmx:100779306 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1217 4 37669820 37673449 Pvu7g0725 7 6400671 6404997 ECH
Pvu4g1217 4 37669820 37673449 Pvu4g1217 4 37669820 37673449 ECH
Pvu4g1217 4 37669820 37673449 Pvu7g0725 7 6400671 6404997 PCT