Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1211 ATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCTTCCCAAGTCAAAGCAACAGGAGGAGCATGGGTTTGCCATGGATTTTGACATTGGCTTTGAAAGTCTATGGTCCTTGGATCATATATCTTTGGTCTCTAACCCCATGTCTCCTTTTCTCTTATCCACTATCTCTGAACAACCCTTTTCTCCTATCTGGGCTTTTGATGTTGAAGATGAGAGGCAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGCAACTGAAAATCCAGTAGAAAGTTATGAGAACAAGAAAACTGTGTCACCACCTTTTGTAGCTGTGCCACCTTCAGAAAACCCAGATGGCTATTGTCTAATAAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCCGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCTATCAGTATAGAACAGCGTCTCTGATGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCCGGTAGAGTTTTTCAGCACAGAATTCCAGAATGGACTCCAAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAATCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGACAGTCATGTGTAGCTGTACTTGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTCAATTTAAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATGAAGATCGCCAGTACGCATTAGCAGAGATTTTGGAGATACTAACAGTTGTGTGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTGAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGCTGTTGCATGGGGCAAGTATGCATGTCTATAACTGACGTAGCATTCTATGTCATAGAGGCTCATACATGGGGTTTCCATGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGAGCATTTTTGTCTCACAACATGTGCTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCATTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGCTAGAGTTTTTTCTTCCTCCAAGGATCACAGACTTTAATGAACAAAAACGTTTGTTGGGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAATTGCTCCATTGAAATTATAGAAGCAAGAAAAGAAGGAGTTCAGTTGAGGTTTGAATCAATTCCAATTACTCAATCTTCTAAGTCACCACCTAGACATGCCTCACCAAATATGGGGGAGAGGCTGCCACCGGCGCCATCGGAGCAGCAAATAATGGTAGACTTTGATGACATAAATGATGGAAAGAATCTTGGCGATACTGCAGGTGGACATATTGATCAGAACACTTCCTTGGAAGCCAGAACCAAAAAGAAACCATCAGAGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCTCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAACTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGTGCATTTGGTTTGAACTCTCTAAGTACTGGTTCTTTTCCCTCCACTTCAAACAAGTTCAACCGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGAAAATGATTTTGATGCTTCTAGAGCATCAGAATCAAACAGACAGGCCGGGGTGGAAGATCACTTCCTAAGTACAAGGACACAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGTGGCCATTCAGGAGACTGGCACTAAAGGCACAACCAGGTTTAGAACTGGGAGCGGCTCAAGTGAAGAAAGTGCAAATCCTTCTCCTCGTGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCACCTCCAAAAGATATATTTGTAACAGGCATCAGTGAGCAATGTCATGTGTTAAGGGGATCACTGGGGTCAACACTGTACTCAACTAGTACACCGAACCGTGCAACTGCATACCCTATGCCTAACAACTTTGTGGAAATAACAGAACCTCAAGAACCATTTGGAGGACAACTACTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGAAATCTGTGTCCTTCAGCCGATGCTGTTTTGGAGGATCAGGTGCACGAACATTGGAGAATGAATCATCAATGTTCTGAGTTGACTCCTGTGCAACACATGGATACTCTCAATAATAATAACAACAACATGACACCTTTTGCAGTTAGGAAAGAGGTGAAGAGTGTGACCATTAAGGCAACTTATAGAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGCTATTGTGGAATTGAAAGAAGAAATTGACAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCTTGCGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATGATCAGGCTTGTTGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTTAA 2943 0.4217 MSESKEENPDLLPKSKQQEEHGFAMDFDIGFESLWSLDHISLVSNPMSPFLLSTISEQPFSPIWAFDVEDERQIRIATAGNTKAATENPVESYENKKTVSPPFVAVPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLYQYRTASLMYMFSVDGENDEILGLPGRVFQHRIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCEHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITDVAFYVIEAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAVCLQSSHTGNDEYVLEFFLPPRITDFNEQKRLLGSILATMKPHFQSLKIAAGVELEQNCSIEIIEARKEGVQLRFESIPITQSSKSPPRHASPNMGERLPPAPSEQQIMVDFDDINDGKNLGDTAGGHIDQNTSLEARTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSFPSTSNKFNRQTSLTIRPSEPKINENDFDASRASESNRQAGVEDHFLSTRTQNPEKVINEKVVAIQETGTKGTTRFRTGSGSSEESANPSPRGSCQGSPPNEMSPPKDIFVTGISEQCHVLRGSLGSTLYSTSTPNRATAYPMPNNFVEITEPQEPFGGQLLEGVGSSKDLRNLCPSADAVLEDQVHEHWRMNHQCSELTPVQHMDTLNNNNNNMTPFAVRKEVKSVTIKATYREDIIRFKISLNCAIVELKEEIDKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNMIRLVVHDILPILGSSCESSGDWKGC* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1211 980 Pfam RWP-RK domain 578 625 IPR003035 -
Pvu4g1211 980 CDD PB1_NLP 882 962 IPR034891 -
Pvu4g1211 980 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Pvu4g1211 980 MobiDBLite consensus disorder prediction 659 675 - -
Pvu4g1211 980 MobiDBLite consensus disorder prediction 500 525 - -
Pvu4g1211 980 MobiDBLite consensus disorder prediction 543 575 - -
Pvu4g1211 980 Gene3D - 878 962 - -
Pvu4g1211 980 SMART PB1_new 881 963 IPR000270 GO:0005515
Pvu4g1211 980 PANTHER PROTEIN NLP8 3 976 IPR045012 GO:0003700
Pvu4g1211 980 MobiDBLite consensus disorder prediction 659 763 - -
Pvu4g1211 980 ProSiteProfiles PB1 domain profile. 881 963 IPR000270 GO:0005515
Pvu4g1211 980 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 976 - -
Pvu4g1211 980 MobiDBLite consensus disorder prediction 688 711 - -
Pvu4g1211 980 MobiDBLite consensus disorder prediction 557 575 - -
Pvu4g1211 980 Pfam PB1 domain 882 962 IPR000270 GO:0005515
Pvu4g1211 980 MobiDBLite consensus disorder prediction 721 756 - -
Pvu4g1211 980 SUPERFAMILY CAD & PB1 domains 881 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1211 Pvu-Chr4 37401537 37406539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1211 252 976 NLP Transcription Factor Family AT4G24020 51.293 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu4g1211 PB1 1.2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1211 - - gmx:100780901 1664.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1211 4 37401537 37406539 Pvu7g0734 7 6573725 6578325 PCT