LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g1205	ATGGATTCGAAGCAACTCGATCGCGTGGGTCCAAAGGTTCGGGTCGTCTCCAGGATCCGCGGGTTTTCGGGTCCTGAGGCTAATTCGCAGCCTGGCACTGCCAGGACTGTGGACTGGATTTCGGTGAACCGCGAAAATTCGGATGATGTCTCTATCTCTTTCAGAGACCATACTAGTCGTTATTTGGTGGACTATTGCTATAAGGAAGATGAAGACAGTGAAATGATATATTCAAGGGAGGTAAAGCCTCTTGTGTCTGCAGCTTTTGAAGGTCATAACAGTACTGTTATTGCACATGGAGCTAGGGGTAGTGGAAAGACCCACATAATTCAGGGCTCTGCTGAGAGTCCGGGTTTGGCAGTGCTTGCTATAGCTGAGTTTCTTTCCGTTGCTGAGAAAAATGGGAAATCCATAACTGTTTCTTTCTACGAGGTTGATCATCAGGATCGGGCCATGGATTTATTAAATCCAGAGAAGCCGCCAATCTTGGTTTTAGAAGATCGTGGCCGAATTCAGTTTAAAGGACTGACTCAGATTCCTGTGAAATCCGTCACTGAATTTCAGAATTTGTACTCCACTGCATGTTTTACCCTGAAGGGAGCTCCCAAAAAAGGTGTTCATGGAAGTCATATGGGATTGATTGTGCATGTCTTTTCCCAGAATGAAAGTACGAGAAGTATTGTGAGCAAAATGAATTTTGTTGACTTGACAGGTTATGAAGATTCTAGAAAGAAAAGTAGTGATGGCTCCCGCCTAATTGAGATTAACAAAATGAACAAGTCAATTTATGCATTATTGAATATTTGTCATGCTTTGAGTACAAATGAAAGTCGTATTCCCTATCGGGAAAGCAAGCTTACACGCATACTACAAGATTCTTTGAGGGGAACTAGTAAAATTTTATTGGTTTCATGCTTGAACCCATCATTTTGCCAAGACACTATTTACATGGTAAGCTTGGCATCACGGTCATGTCATCGGATTCATCATCAGACATCCTTAGATTCCACCAAGAAAAATGTTAGTTCAGCAAAACAGATGGTGAATTCTCATATGAAACAGATACCTAAAAGTGTTTCTGGGACGGCAAAGAAATTGCATGGTTCTTCTAAACTACTTGAAAAAAATGTTGTTTCTAAGAAGTCTGCAATGAAAGGAAGGAAATTGTTTGATAAAGCTAGCCATTCCGTTGCTAAGGTTGAGAAGGAAATTTCTGTTACTGATATTTCTCAAGCATCAAAGCCTTTGACGGATATCCCATTATGTGAGACTGGAAATCATGTCGTATTCAACTCTGGAATGGAAATGGATGACTCATTTGCAAAAGCTAGTCAGAACATGAAACTTTATCCGACGTTGGAAAATGGTGATTCATCTTTGAACGCTAGCAGTGAAGTGGAATTCAATCCCCTAGAAGTTAAGGATATTTTGGTGGATGTAGAGGATGGTCAGAAGGAGCATAATACCCCTTGTGTCAGTAATTGCTCAATAATAGTTCAGAAAGACCATAGCTCATCACCCATTAGCTCACCACCCATTAGCTCACAGTTGCGTGATCTTTCTAATAGTCTTAAACTTACAATGTTGTGTTCTTCAACTTCGTCGTACATGCAAATATCAGAGAAGGAACTCATTCCAGTTGGTAGTGTAGAACCAAAAACTCCTACAATTGCTCAAAACAGGAGCATTAACCGATTGGATGAAATGAATGGCAAAAGTCCCTGGGAGACATTCAACATGCGAGGTTCTGGAATGAAGAATTCTATTGTTCAAGAATACCTAAGATTTCTGAACACAGCTGAAAAGAGCGAATTAAAAAGATTGAAGGGAATTGGAGAAAAGAGAGCTACCTCCATACTCGAATTTAGAGAAGAATCTCCCGAACCTTTCAAAACTCTGGATGATTTAAAGGACATAGGACTCTCGACAAAGCAGATTAAGGAAATGATGAAGAATGAGATTGGAGAGCTTTTCAATGAACTGTAA	1986	0.4033	MDSKQLDRVGPKVRVVSRIRGFSGPEANSQPGTARTVDWISVNRENSDDVSISFRDHTSRYLVDYCYKEDEDSEMIYSREVKPLVSAAFEGHNSTVIAHGARGSGKTHIIQGSAESPGLAVLAIAEFLSVAEKNGKSITVSFYEVDHQDRAMDLLNPEKPPILVLEDRGRIQFKGLTQIPVKSVTEFQNLYSTACFTLKGAPKKGVHGSHMGLIVHVFSQNESTRSIVSKMNFVDLTGYEDSRKKSSDGSRLIEINKMNKSIYALLNICHALSTNESRIPYRESKLTRILQDSLRGTSKILLVSCLNPSFCQDTIYMVSLASRSCHRIHHQTSLDSTKKNVSSAKQMVNSHMKQIPKSVSGTAKKLHGSSKLLEKNVVSKKSAMKGRKLFDKASHSVAKVEKEISVTDISQASKPLTDIPLCETGNHVVFNSGMEMDDSFAKASQNMKLYPTLENGDSSLNASSEVEFNPLEVKDILVDVEDGQKEHNTPCVSNCSIIVQKDHSSSPISSPPISSQLRDLSNSLKLTMLCSSTSSYMQISEKELIPVGSVEPKTPTIAQNRSINRLDEMNGKSPWETFNMRGSGMKNSIVQEYLRFLNTAEKSELKRLKGIGEKRATSILEFREESPEPFKTLDDLKDIGLSTKQIKEMMKNEIGELFNEL*	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g1205	661	PRINTS	Kinesin heavy chain signature	91	112	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu4g1205	661	PRINTS	Kinesin heavy chain signature	230	248	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu4g1205	661	PRINTS	Kinesin heavy chain signature	279	300	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu4g1205	661	PANTHER	KINESIN-LIKE PROTEIN KIN-10C	12	651	-	-
	Pvu4g1205	661	SMART	HhH1_4	603	622	IPR003583	GO:0003677\|GO:0006281
	Pvu4g1205	661	Pfam	Kinesin motor domain	19	323	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu4g1205	661	Pfam	Helix-hairpin-helix motif	597	643	-	-
	Pvu4g1205	661	Gene3D	Kinesin motor domain	10	366	IPR036961	-
	Pvu4g1205	661	SUPERFAMILY	RuvA domain 2-like	590	649	IPR010994	-
	Pvu4g1205	661	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	10	323	IPR027417	-
	Pvu4g1205	661	PANTHER	KINESIN-RELATED	12	651	IPR027640	GO:0003777\|GO:0007018
	Pvu4g1205	661	Gene3D	-	585	657	-	-
	Pvu4g1205	661	SMART	kinesin_4	10	336	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Pvu4g1205	661	ProSiteProfiles	Kinesin motor domain profile.	12	327	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g1205	Pvu-Chr4	37303868	37309487	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g1205	12	309	Calmodulin-binding Proteins	AT5G65930	31.329	2.09e-30	126

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g1205	K10403		-	gmx:100809612	929.858

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu4g1205	4	37303868	37309487	Pvu4g1205	4	37303868	37309487	ECH