Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1179 ATGGTTCCATCACTTTGTGCTAATGGTTGTGGGTTCAATGGTTCTCTTATCAACAAGAATTTTTGTTCAAAGTGCTACAAAGATTATCTCAAAGAAAACAACACCAAATCAAAGGGTTGTAAGGGTGTAGAGTGTGAAAGGAATAACAAAAAAAATTATTTTGAGAAGAATGAGAGAAAGAGATGCAACAGTTGCAAGAAGAGGATTGGATTATTAGGGTTCCAATGTCGCTGTGGAGATGTTTTCTGTGGATCACATAGATATCCAGAGATGCATGCTTGCAAAATAGATTGGAAGGAAATTGATCGTGAAGTTTTGATTAAAGAAAATCCTTTATGCATTAGTGATAAATTAAAACTTAGAATTTAG 369 0.3388 MVPSLCANGCGFNGSLINKNFCSKCYKDYLKENNTKSKGCKGVECERNNKKNYFEKNERKRCNSCKKRIGLLGFQCRCGDVFCGSHRYPEMHACKIDWKEIDREVLIKENPLCISDKLKLRI* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1179 122 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 122 - -
Pvu4g1179 122 SUPERFAMILY AN1-like Zinc finger 45 116 IPR035896 -
Pvu4g1179 122 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Pvu4g1179 122 SMART AN1_Zf_4 62 99 IPR000058 GO:0008270
Pvu4g1179 122 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Pvu4g1179 122 ProSiteProfiles Zinc finger AN1-type profile. 56 102 IPR000058 GO:0008270
Pvu4g1179 122 Gene3D - 49 105 IPR035896 -
Pvu4g1179 122 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 39 - -
Pvu4g1179 122 Gene3D - 1 48 - -
Pvu4g1179 122 Pfam AN1-like Zinc finger 62 96 IPR000058 GO:0008270
Pvu4g1179 122 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Pvu4g1179 122 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 3 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1179 Pvu-Chr4 36575964 36576405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1179 5 119 C2H2 Transcription Factor Family AT3G52800 37.013 8.67e-23 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1179 - - pvu:PHAVU_004G110900g 270.396