Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1178 ATGGTTACATCACTTTGTGCTAATGATTGTGGGTTCAATGGTTCTCCTACGAACAAGAACCTTTGTTCAAAGTGGTACAAAGATTATCTCAAAGAAAACAACACCAAATCAAAGGGTTATAAGGGTGTAGAGTGTGAAACAAATAACATGAATTCTGTTTTGAGTTCTACAAGTTCTATCATTGATTATATGACTTTTGTTTCTGATATGAGTAAGAAGAATGAGAGAAAGAGATGCAATAGTTGCAAGAAGAGGATTGGATTATTAGGGTTCCAATGTCTTTGTGGAGATGTTTTTTGTGGATCACATAGATATCCAGAGATGCATGCATGCAAAATAGATTGGAAGGAAATTGGTCGTGAAGTTTTGATTAAAGAAAATTCTTTATGCATTAGTGATAAACTAAAACATAGAATTTAG 420 0.331 MVTSLCANDCGFNGSPTNKNLCSKWYKDYLKENNTKSKGYKGVECETNNMNSVLSSTSSIIDYMTFVSDMSKKNERKRCNSCKKRIGLLGFQCLCGDVFCGSHRYPEMHACKIDWKEIGREVLIKENSLCISDKLKHRI* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1178 139 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Pvu4g1178 139 SMART AN1_Zf_4 79 116 IPR000058 GO:0008270
Pvu4g1178 139 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 4 139 - -
Pvu4g1178 139 Gene3D - 1 57 - -
Pvu4g1178 139 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 139 - -
Pvu4g1178 139 Pfam AN1-like Zinc finger 79 113 IPR000058 GO:0008270
Pvu4g1178 139 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Pvu4g1178 139 Gene3D - 58 133 IPR035896 -
Pvu4g1178 139 ProSiteProfiles Zinc finger AN1-type profile. 73 119 IPR000058 GO:0008270
Pvu4g1178 139 Pfam A20-like zinc finger 4 24 IPR002653 GO:0003677|GO:0008270
Pvu4g1178 139 SUPERFAMILY AN1-like Zinc finger 70 133 IPR035896 -
Pvu4g1178 139 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1178 Pvu-Chr4 36567645 36568087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1178 5 136 C2H2 Transcription Factor Family AT3G52800 33.974 3.39e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1178 - - pvu:PHAVU_004G110800g 299.286