Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1175 ATGGTTACATCACTTTGTGTTAATGGTTGTGGGTTCAATGGTTCTCCTACCAACAAGAACCTTTGTTCAAAGTGCTACAAAGATTATCTCAAAGAAAACAACGTCAAATCAAAGGGTTGTAAGGGTGTAGAGTGTGAAACGAATAACATGAATAACAAAAAAAATTATTTTGAGGTAACATCATGTATTTCTGAAAGTTCTACAAGTTCTATCATTGATGATATGACTTTTGTTTCTGATATGAGTAAGAAGAATGAGAGAAAGAGATGCAACAGTTGCAAGAAGAGGATTGGATTATTAGGGTTCCAATGTCGTTGTGAAGATGTTTTTTGTGGATCACATAGATATCCAGAGAGATGCATGCATGCAAAATATATTGGAAGGAAATTGGTCGTGAAGTTTTGTTTAAAGAAAATCCTTTATGCATTAGTGATAAACTAA 441 0.3333 MVTSLCVNGCGFNGSPTNKNLCSKCYKDYLKENNVKSKGCKGVECETNNMNNKKNYFEVTSCISESSTSSIIDDMTFVSDMSKKNERKRCNSCKKRIGLLGFQCRCEDVFCGSHRYPERCMHAKYIGRKLVVKFCLKKILYALVIN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1175 146 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Pvu4g1175 146 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 4 4 120 - -
Pvu4g1175 146 SMART AN1_Zf_4 90 125 IPR000058 GO:0008270
Pvu4g1175 146 Gene3D - 67 124 IPR035896 -
Pvu4g1175 146 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 120 - -
Pvu4g1175 146 SUPERFAMILY AN1-like Zinc finger 80 119 IPR035896 -
Pvu4g1175 146 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 40 - -
Pvu4g1175 146 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
Pvu4g1175 146 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Pvu4g1175 146 Gene3D - 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1175 Pvu-Chr4 36508070 36508510 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1175 5 133 C2H2 Transcription Factor Family AT3G52800 33.333 2.15e-14 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1175 - - pvu:PHAVU_004G110800g 200.675