Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1173 ATGGTTACATCACTTTGTGCTAATGGTTGTGGATTCAATGGTTCTCCTATCAACAAGAATCTTTGTTCAAAGTGCTACAAAGATTATCTCAAAGAAAACAACACCAAAGCAAAGGGTTGTAAGGGTGCACAGTGTGAAGCAAATAACATGAATAACAAAAAAAATTATTTTGAGGTAACATCATGTATTTCTGAAAGTTCTACAAGTTCTATCATTGATGATATGACTTCTGTTTCTGATGTGAGTAAGAAGAATGAAAGAAAGAGATGTAACAGTTGCAAGAAGAGGATTGGGTTATTAGGGTTCCAATGTCGTTGTGGAGATGTTTTTTGTGGTTCACATAGATATCCAGAGATGCATGCATGCAAAATAGATTGGAAGAAAATTGGTCGTGAAGTTTTGATTAAAGAAAATCCTTTATGCATTAGTGATAAGCTAAAACATAGAATTTAG 453 0.3355 MVTSLCANGCGFNGSPINKNLCSKCYKDYLKENNTKAKGCKGAQCEANNMNNKKNYFEVTSCISESSTSSIIDDMTSVSDVSKKNERKRCNSCKKRIGLLGFQCRCGDVFCGSHRYPEMHACKIDWKKIGREVLIKENPLCISDKLKHRI* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1173 150 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 150 - -
Pvu4g1173 150 Gene3D - 67 144 IPR035896 -
Pvu4g1173 150 SUPERFAMILY AN1-like Zinc finger 77 144 IPR035896 -
Pvu4g1173 150 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8-RELATED 4 150 - -
Pvu4g1173 150 Gene3D - 1 66 - -
Pvu4g1173 150 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Pvu4g1173 150 Pfam AN1-like Zinc finger 90 124 IPR000058 GO:0008270
Pvu4g1173 150 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 38 - -
Pvu4g1173 150 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Pvu4g1173 150 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Pvu4g1173 150 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Pvu4g1173 150 Pfam A20-like zinc finger 4 27 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1173 Pvu-Chr4 36483932 36484384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1173 5 147 C2H2 Transcription Factor Family AT3G52800 33.117 2.66e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1173 - - pvu:PHAVU_004G110800g 242.276