Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1167 ATGGATCCCAATATTGATGATAAGAGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTTTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCTGAGGACTTCTTATGGCACACACGTGGCCCAAAACGCGGGGAGCCACGTGGTTTTGCTTTTATCCAGTATAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAAATGCATGGGAGGTTTGCCTGCGGCCGGCCACTGGTTGTTCGTCTTGCCGGTGAGAAGTGCTTGTTGGAAACAGCTGATAAGTCTACAAAAGCAGCAAGTGAAGGACAGAAGATGCTTCTCATTGGTGGTGGTGGTGCCATGGGACAGACAAGTCGTACTGCAAAAATAGCTGCTATAAAAAATAAATTGAAATCCTTGGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAAATGGCAACATCTCTTGA 474 0.4346 MDPNIDDKSESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRFACGRPLVVRLAGEKCLLETADKSTKAASEGQKMLLIGGGGAMGQTSRTAKIAAIKNKLKSLEEESSRTKKQKQNGNIS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1167 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 92 IPR000504 GO:0003723
Pvu4g1167 157 SUPERFAMILY RNA-binding domain, RBD 4 94 IPR035979 GO:0003676
Pvu4g1167 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 85 IPR000504 GO:0003723
Pvu4g1167 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 6 154 - -
Pvu4g1167 157 CDD RRM_RBM18 12 90 IPR039157 -
Pvu4g1167 157 Coils Coil 130 150 - -
Pvu4g1167 157 SMART rrm1_1 12 88 IPR000504 GO:0003723
Pvu4g1167 157 MobiDBLite consensus disorder prediction 138 157 - -
Pvu4g1167 157 Gene3D - 8 102 IPR012677 -
Pvu4g1167 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1167 11 93 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 5.21e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1167 K24527 - gmx:100806572 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1167 4 36109597 36111988 Pvu4g1167 4 36109597 36111988 ECH