Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1125 ATGACTCATGAGGATTGGGATCTCTTTGCCATCGTTCGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAAACACAGAAAACCCACCCACCATGACTTCCACCACCACTTCTTTCTCTCCAAACACTACCTCTTGCTTGGATGTCAGCCAAGACAATGGCTCATTCTCTTTTCCCAATCTTGTGCAGCCAACAACCAATGATTTTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCAACACCACCATTTCTAGCACTATCACTAGTGCTGTTGGCATCAATCCCAATTCCACTTTTTCTGACGCTGCGGGATTCATTGGACAACAGCATATACAACAAGCTCATCACCATCATCTAGTTCCTGCTCCCACAAATCACTCCTCCATTGGAGCACCCTCCACCACTGGTTTTGACAGATTCCAACACCACCACCATCACTATCCCCACCACCAACAACAACATCAACCCCAAACCCCAGAACAACAGCAACACAAGCAAAACCAGCCACAACTTCAAGCACCTCAAACAAGTCCCGTCCTTTCACCAACCACACAACCACAAACACCCAGATCAAGAAAGAGAAAAACCCAACAGAAGAAAATGGTGTGTCATGTAACCGCAGACAACCTCTCAGCAGATTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCATATCCAAGGAACTATTACAGGTGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCACCACCGAACCCAACACGTTCATCGTCACCTACACCGGCGACCACAAACACGCCAAACCCGTTCACCGGAACTCCCTCGCCGGCAGCACCCGAACCAAGCCATCTCCGGCCAGTTTACCCGAAACCCATGAAGCTGTTTCTTGTATCAAAATACAAAACGCGTGTTCATCGACTTCTGAGCTTTCTACCACGTCGTTGAGGTCTGGCACGCCGGAAAACGAGGAAATGGTCGCCGCCGGCGAACCCGATTTCCTGGAGATGGAAGTTGACCCTGACGCGCTGTCTGAAAACGACTACGACCTTTTGATACCCAACACGGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTGAGACAAAGGCATCGGATCCGAATAGTGATTCCGGGTTGACCCGGTCCAAATCCGACCCATTTTATAACCCGGTGTAG 1206 0.4959 MTHEDWDLFAIVRSCKAATFTATTNTENPPTMTSTTTSFSPNTTSCLDVSQDNGSFSFPNLVQPTTNDFQELHQLLINFNPTNTTISSTITSAVGINPNSTFSDAAGFIGQQHIQQAHHHHLVPAPTNHSSIGAPSTTGFDRFQHHHHHYPHHQQQHQPQTPEQQQHKQNQPQLQAPQTSPVLSPTTQPQTPRSRKRKTQQKKMVCHVTADNLSADSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSTTEPNTFIVTYTGDHKHAKPVHRNSLAGSTRTKPSPASLPETHEAVSCIKIQNACSSTSELSTTSLRSGTPENEEMVAAGEPDFLEMEVDPDALSENDYDLLIPNTGAMSDAVLLGLTNGAETKASDPNSDSGLTRSKSDPFYNPV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1125 401 MobiDBLite consensus disorder prediction 124 205 - -
Pvu4g1125 401 MobiDBLite consensus disorder prediction 377 401 - -
Pvu4g1125 401 ProSiteProfiles WRKY domain profile. 209 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu4g1125 401 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 4 380 - -
Pvu4g1125 401 MobiDBLite consensus disorder prediction 155 194 - -
Pvu4g1125 401 MobiDBLite consensus disorder prediction 271 298 - -
Pvu4g1125 401 Pfam WRKY DNA -binding domain 216 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu4g1125 401 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 380 IPR044810 GO:0003700
Pvu4g1125 401 Gene3D WRKY domain 197 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu4g1125 401 MobiDBLite consensus disorder prediction 376 401 - -
Pvu4g1125 401 SMART WRKY_cls 214 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu4g1125 401 SUPERFAMILY WRKY DNA-binding domain 209 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1125 Pvu-Chr4 34620507 34622280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1125 193 333 WRKY Transcription Factor Family AT5G52830 60.417 1.58e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu4g1125 WRKY 7.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1125 K13425 - gsj:114367469 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1125 4 34620507 34622280 Pvu7g0770 7 6907213 6908842 ECH
Pvu10g1086 10 36231937 36233733 Pvu4g1125 4 34620507 34622280 ECH
Pvu8g0593 8 5181941 5183860 Pvu4g1125 4 34620507 34622280 ECH
Pvu2g1648 2 30201373 30202358 Pvu4g1125 4 34620507 34622280 ECH
Pvu10g1512 10 41665877 41671047 Pvu4g1125 4 34620507 34622280 ECH
Pvu4g1125 4 34620507 34622280 Pvu4g1125 4 34620507 34622280 ECH
Pvu4g1125 4 34620507 34622280 Pvu7g0770 7 6907213 6908842 PCT