Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1085 ATGGGGGGTGGTAAGATCAATTCAAGTGAATACAATGATACAACTGCAACCAAAATCTTTGTTGGAGGCTTAGCTTGGGAGACTCAAAGGGACACAGTGAGAAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGTTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTTAAGGATCCAGAGGCAACAAAGCAAGCATGTAAAAATCCCTATCCAATAATTGATGGAAGGAAAACAAATTGCAATATTGCATCTATTGGAGCAAACAAGAATTGCAGGCAGGCTCCACAACATGGTCGGTTTGGAGCAGCACCTGGTTTGTTGCCTTCACCTGTTTATCATGATCCTTCCTCTACATATCTCCATCAAAACAATGTGCAATACACATTTCCTGATCCAACTTTTGGGCCATCTAAACCTATAGGTTTGGTCCATAACACTTACCCTTTTTCTGCTCAGTATGCACACATTGGCCAAGCTCAAGGTTTTGGAGTCCATTATCCCCGAATGATGAAGAATCATGTAACAATTACAACAACAAAAAGAGAGGCACTAAGAACATGTGCAGATGCTTCACAAACCACTGAAATATCTTTTGAACAAGATTCTTCAGCTGAATCTTCAAATAAATAA 657 0.3957 MGGGKINSSEYNDTTATKIFVGGLAWETQRDTVRRYFEQFGEILEVVVITDKNTGRSKGYGFITFKDPEATKQACKNPYPIIDGRKTNCNIASIGANKNCRQAPQHGRFGAAPGLLPSPVYHDPSSTYLHQNNVQYTFPDPTFGPSKPIGLVHNTYPFSAQYAHIGQAQGFGVHYPRMMKNHVTITTTKREALRTCADASQTTEISFEQDSSAESSNK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1085 218 SMART rrm1_1 18 90 IPR000504 GO:0003723
Pvu4g1085 218 PANTHER - 4 144 - -
Pvu4g1085 218 PANTHER - 146 180 - -
Pvu4g1085 218 CDD RRM_RBM24_RBM38_like 17 92 - -
Pvu4g1085 218 Gene3D - 8 100 IPR012677 -
Pvu4g1085 218 SUPERFAMILY RNA-binding domain, RBD 16 163 IPR035979 GO:0003676
Pvu4g1085 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Pvu4g1085 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Pvu4g1085 218 PANTHER BOULE-RELATED 4 144 IPR037366 GO:0003729
Pvu4g1085 218 PANTHER BOULE-RELATED 146 180 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1085 Pvu-Chr4 30726886 30729026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1085 6 93 C2H2 Transcription Factor Family AT2G19380 40.909 1.16e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1085 - - pvu:PHAVU_004G102100g 456.062