Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1083 ATGAATGTTATTGATCGTTGTTGGGGACAAAATCCTGAATGGTGGAGACACCAATCTCAGTTAGCCATAAGTTTTGTGACTTGTGCTTGCAAGATGATAAATAACATTGGTAATGACCTTATTCATTATAAAGTTAGTCACTCTAGTGATGATCCTATAACCCAAACCAAACACCTTAAGATTGACCATAATACACTTTATGATTGTCAAGATGGTTTGTTTGATGTAACAAGAGGTTCCACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGATGATAGGTATGTGAGAGACGAGACTATGAAGGTTACTGTGGTGTATAACCATTTTGAACCTAATTGTAATCAATCAAATTTTTATCAAGGATGGCTTCAATATGGCATTGGTAGAAGCATGGAACGTAGTCTTAAAAGTGAAGCTAACCCCTTTGTAGCACCGACAATAGGAAATAAAGAGGTGACGTGGAGAAAGGGTAATGATAAAAATGAAGATAAATGGAAATTTCATTCGATAAGGGACGTTTTTGAAAATGGACCTTACTTTAATGTAACAAAAGGAGGAGATGTGAAAAAATTGAATGATAGCAAAGAACGAAATTTTAAAGTTGTTGATGCCAAATTCGTGAGATTTATAACACATTCATCTGGTGTTCTGCGATACAATAAACATTCTATATATTGA 711 0.3432 MNVIDRCWGQNPEWWRHQSQLAISFVTCACKMINNIGNDLIHYKVSHSSDDPITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQSNFYQGWLQYGIGRSMERSLKSEANPFVAPTIGNKEVTWRKGNDKNEDKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVLRYNKHSIY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1083 236 SUPERFAMILY Pectin lyase-like 45 192 IPR011050 -
Pvu4g1083 236 SMART amb_all 2 159 IPR002022 -
Pvu4g1083 236 PANTHER PECTATE LYASE 1 55 - -
Pvu4g1083 236 PANTHER PECTATE LYASE 58 232 - -
Pvu4g1083 236 PANTHER PECTATE LYASE 18-RELATED 1 55 IPR045032 GO:0030570
Pvu4g1083 236 PANTHER PECTATE LYASE 18-RELATED 58 232 IPR045032 GO:0030570
Pvu4g1083 236 Gene3D - 37 229 IPR012334 -
Pvu4g1083 236 PRINTS Pollen allergen Amb family signature 136 155 IPR018082 -
Pvu4g1083 236 PRINTS Pollen allergen Amb family signature 176 200 IPR018082 -
Pvu4g1083 236 PRINTS Pollen allergen Amb family signature 207 230 IPR018082 -
Pvu4g1083 236 Pfam Pectate lyase 53 121 IPR002022 -
Pvu4g1083 236 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1083 Pvu-Chr4 30456030 30458170 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1083 36 168 Polysaccharide Lyase AT5G09280 56.757 3.57e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1083 K01728 - gmx:100780437 257.684