Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1082 ATGGCTGGGCAATCAAACCATGAGCTTTCACTGTTTTCAGCAGAGGAGCTTGAGTTCATTGCTGAGGATGAGATCGTGGACATTGTGCCTAATCTCAAAATGGGACCTCTCAATTTCATTTCTGGAGACTTTGGCCCATTTAAGCCACAGATTGTTACTCAAGTACCGCTGTGGTTGGCCATTGCTCTCAAGAAGAGAGGCAAGTGCTCCATTCACCCTCCCCAGTGGATGTCTGTTGAGAAGTTGAGTCAAGTTTTGGAGACAGAGCGAGACTCTCAAGAGATGTCAGATCAATTGCCTTTCCATTATGTGGAAATTTCAAGACTTCTTTTTGATCATGCACGTGATAACATTCCCAATTTATATATGGTGAGATCTCTAATTGAGGATATAAGAAATGTAAGGTTTCATAAAGTTGAAACAGACTTTGATGTGAATGCAATAACAAGAATACATGATTCTTTGACATTCTTAGGAGCAACTTGA 486 0.4074 MAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMGPLNFISGDFGPFKPQIVTQVPLWLAIALKKRGKCSIHPPQWMSVEKLSQVLETERDSQEMSDQLPFHYVEISRLLFDHARDNIPNLYMVRSLIEDIRNVRFHKVETDFDVNAITRIHDSLTFLGAT* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1082 161 Pfam GINS complex protein 53 144 IPR021151 -
Pvu4g1082 161 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 1 146 IPR007257 GO:0005634|GO:0006260
Pvu4g1082 161 PIRSF GINS_PSF2 2 158 IPR007257 GO:0005634|GO:0006260
Pvu4g1082 161 SUPERFAMILY GINS helical bundle-like 73 146 IPR036224 -
Pvu4g1082 161 Gene3D - 78 160 - -
Pvu4g1082 161 CDD GINS_A_psf2 66 160 - -
Pvu4g1082 161 SUPERFAMILY PriA/YqbF domain 12 71 - -
Pvu4g1082 161 Gene3D - 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1082 Pvu-Chr4 30327217 30329600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1082 1 143 Core DNA Replication Machinery Family AT3G12530 67.133 8.95e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1082 K10733 - gmx:100780528 263.077