Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1080 ATGATTTTATTTTTCATTTCAAGCATTAGTTTTGCGAAGCAATCAAAGATAAATGGTTGGAAAATGAATGTTATTGATCGATGTTGGAGACTAAATTCTGAATGGAGGAGACACCAATCTCAATTAGCCACATGCTCTGTGGGTTATGCTGGTAAGATGGTAAACAACATTGGTAAGGACATTATTCATTATAAAGTTACGGACTCTAGTGATGATCCTATAAACCCCAAACCCAACACTTTGAGGTATGGAACTTCTATTATTCAAGGTAAGGTGTGGATCACATTCCAAAAAGACATGCTCATTACATTAGAGAAACCTCTTCTCATTAGTAGTTTTACCACGATCGATGGTCGAGGTGTTAACGTTCAAATTGCTAATAATGCATGTTTAATGATCTTTAAGGCCACCAATATAATCATTCATGGCATTCGAGTTCATCATTGCAAGCCTCAAGCCCCTGGGATTGTAATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGTCATGTAGATGGAGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGACCATAATACATTTTACAATTGTCAAGATGGTTTGCTTGATGTAACACGAGGGTCAACTAATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAGGTTATGCTTCTCGGACATGATGATGGATATGTGAGAGACCAAAACATGAAGGTTACTGTAGTATACAATCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTTGCAAATAATCTTTATCAAGGATGGCTTCAATATGCTATTGGTGGAAGCATGGAACCTAGTCTCAAAAGCGAAGCCAATCTCTTCATAGCACCAACAATAGGAAACAAAGAGGTGACATGGAGAAAGAGCAGCAATAAAAATGGAGATAGATGGAATTTTCATTCGATAGGGGACAATTTTGAAAATGGAGCTTCCTTCGCCGTAACAAAAGGAAGAGATATGCAAAAACCAAATTATAGCAAAGAACAAAAATTTAAAGTTGTTAATGCCAAATTTGTAAGATCGTTGACACGTTCATCAGGAGTGTTACGATACAATAGAAATTTTGTGAATTGA 1122 0.3681 MILFFISSISFAKQSKINGWKMNVIDRCWRLNSEWRRHQSQLATCSVGYAGKMVNNIGKDIIHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVQIANNACLMIFKATNIIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTFYNCQDGLLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFIAPTIGNKEVTWRKSSNKNGDRWNFHSIGDNFENGASFAVTKGRDMQKPNYSKEQKFKVVNAKFVRSLTRSSGVLRYNRNFVN* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1080 373 Gene3D - 22 366 IPR012334 -
Pvu4g1080 373 PANTHER PECTATE LYASE 18-RELATED 3 369 IPR045032 GO:0030570
Pvu4g1080 373 SUPERFAMILY Pectin lyase-like 16 363 IPR011050 -
Pvu4g1080 373 PANTHER PECTATE LYASE 3 369 - -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 45 62 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Pvu4g1080 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Pvu4g1080 373 SMART amb_all 99 296 IPR002022 -
Pvu4g1080 373 Pfam Pectate lyase 110 290 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1080 Pvu-Chr4 30122338 30123782 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1080 53 300 Polysaccharide Lyase AT5G09280 69.758 3.73e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1080 K01728 - gmx:100780437 648.662