Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1051 GTGGGGAAGACACGTGGAATGGGAGTTTCTCACAAGCTCAAGTCCTATCGCAGGAGGCAAAGGTGGGCTAATAAGTCATACAAGAAATCCCATCTTGGGAATGAATGGAAGAAACCTTTTGTTGGCTCTTCCCATGGAAAGGGAATTTGTGACAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTTCTTTTTTCCCAAATGATGGTTGCTTGAACTACATTGAAGAGGATGATGAAGTTTTGATTGTTGGATTTGGACAAAAGGGCCATGCTATGGGTGATATTCCTAGTGTCAGGTTTAGGGTTGTAAAGGTCTTCGATGTGTCTCTTTTAGCTCTTTTCAAGGAGAAGCCAAGGTCGTAA 366 0.4262 VGKTRGMGVSHKLKSYRRRQRWANKSYKKSHLGNEWKKPFVGSSHGKGICDRVQLIKNGKKIASFFPNDGCLNYIEEDDEVLIVGFGQKGHAMGDIPSVRFRVVKVFDVSLLALFKEKPRS* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1051 121 MobiDBLite consensus disorder prediction 10 25 - -
Pvu4g1051 121 SUPERFAMILY Nucleic acid-binding proteins 20 119 IPR012340 -
Pvu4g1051 121 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g1051 121 Gene3D - 25 121 IPR012340 -
Pvu4g1051 121 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 50 121 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu4g1051 121 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 57 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu4g1051 121 Pfam Ribosomal protein S12/S23 50 118 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu4g1051 121 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 2 49 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu4g1051 121 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 50 118 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pvu4g1051 121 PANTHER 40S RIBOSOMAL PROTEIN S23 50 118 - -
Pvu4g1051 121 PANTHER 40S RIBOSOMAL PROTEIN S23 2 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1051 Pvu-Chr4 28591646 28592065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1051 1 121 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 69.014 1.95e-63 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1051 K02973 - bvg:104884310 199.134