Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1050 ATGGCAAAGATAAGGGAGAAGCTATACGTCACCGTTCCGAGTCTCTTTCGGTGCCCAATTTCAATGGACGTGATGCGCTCCCCCGTAAGCCTCTGCACCGGCGTCACGTACGATCGCGCCAGCATTCAGCGTTGGCTTGACTCAGGAAACGATACGTGTCCCGCCACCATGCAGGTTCTTCCCTCTAAAGACTTCATCCCCAATCTCACCCTTCACCGCCTCATCCGCCTCTGGCTCCTCTCCGCAGACCCTCCTTCGCCCGAATCCTCCGCCGACAACCTCCGCTCTCTCCTCCGCCCAATACAAACCGGCAACGATGACCTCGCCGGAACCCTCTCCAAAATCGCCGAATTCGCCACATCCTCTGCCGAGAATCGTCGGAAACTCGCCTCCTTCCCCGGCTTCGACGCCGCCATCGTCCGCGCGCTGGCCGGATGTAGTTCGCGGATCGACGTGTCGGAAAACGCGATTTACCTTCTCGACTCGGTCCTCCGACAAAACGGAAATCCAGAGAAAATCCGAAGGCTAATTCTCGACGCTCGCCAACAATGCTTTGATTCGATGCTTTTCGTTTTGCGAAACGGATCTGCGAAATCGAAGATTGAAACGGTTAGGGTTTTGGAGTTTCTCGCGCGCGATTTTCAGTCCTCGAAATCGATTGTAGAAACGCAAGGGCTGTTGTCTTCGTTAGCGGGATTTTTGAAGGACGGTGGAGAGGAGTTACGCGACGCCGTTTTGTTGTTTCTTGGCGTCGTTTCGGTGACTCGCTCCGCGAAGGTGGAGCTAGTTAATTGCGGTGTTGTCGAATTGGTTTCGAAATTGTTACAAGAGTGTTCGTCGGCGAAGACGGCGGAGAGGTGTCTGAGAGTGCTTGCGGTGGTGGCGACGTGCGCGGAGGGGAGGGCGGCGATGGTGGCGGAGCCTTCATGTGCAGCGGCGGTGGTGGAGAGAGTGACGAAGGCGGCGAAGGCCGCGGCGGAGGACGCGGTGATGGTGCTGTGGAGCTTGTGCTGTTTGAGCGGTAACGTGAAGGTTAGGGATGACGTGGCAAAACGAAACGGCGTCGCTGTGATTTTATTGGCTATGCAGAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGTGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGCAAGAACAACGGGTTAGGGTTGGAACTAGGAAGCTATGACACCAAAACAACTCATATCAAACCTTGCTAA 1224 0.5539 MAKIREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGNDTCPATMQVLPSKDFIPNLTLHRLIRLWLLSADPPSPESSADNLRSLLRPIQTGNDDLAGTLSKIAEFATSSAENRRKLASFPGFDAAIVRALAGCSSRIDVSENAIYLLDSVLRQNGNPEKIRRLILDARQQCFDSMLFVLRNGSAKSKIETVRVLEFLARDFQSSKSIVETQGLLSSLAGFLKDGGEELRDAVLLFLGVVSVTRSAKVELVNCGVVELVSKLLQECSSAKTAERCLRVLAVVATCAEGRAAMVAEPSCAAAVVERVTKAAKAAAEDAVMVLWSLCCLSGNVKVRDDVAKRNGVAVILLAMQRGWEEHVRSMCVDLIKVLKGACKNNGLGLELGSYDTKTTHIKPC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1050 407 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 407 - -
Pvu4g1050 407 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Pvu4g1050 407 PANTHER WDSAM1 PROTEIN 6 407 IPR045185 GO:0061630
Pvu4g1050 407 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Pvu4g1050 407 CDD RING-Ubox_PUB 16 58 IPR045210 -
Pvu4g1050 407 Gene3D - 80 392 IPR011989 -
Pvu4g1050 407 SUPERFAMILY ARM repeat 192 382 IPR016024 -
Pvu4g1050 407 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Pvu4g1050 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
Pvu4g1050 407 SUPERFAMILY RING/U-box 8 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1050 Pvu-Chr4 28527611 28529629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1050 6 406 U-box Gene Family AT5G09800 39.036 2.57e-80 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1050 - - gmx:100786235 603.594