Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1044 ATGGCCTTTCTTGAACCTCGACACCTATTTTTGTCTTGTTTTATTTTCTTTTTCCTTTTAAACCTTAGTTTTGCAAAGCAATCAAAGAAAAATGGTTTGGAAATGAATGTTATTGATCGATGTTGGAGACAAAATCCTGAGTGGAGGAGACACCGATCTCAGTTAGCCACATGTTCTGTGGGTTATGTTGGCAAGATGATAAACAACATTGGTAATGACCTTATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCCAAACCCAACACTTTGAGGTACGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTTCAAAAGGACATGCACATTAAACTAGAGAAACCCCTTCTTATTAGTAGTTTTACCACCATCGATGGTCGAGGTGTTAACATCCACATTGCTGATAGTGCATGCTTGATGATCTTTAAGGCCACCAATATAATTATCCATGGCATTCGAGTTCATCATTGCAAACCTCAACCTCCTGGGATCGTAATGGGACCTGAAGGAAAAGTGATTTCTTTAGGCCAAGTAGACGGGGATGCAATAAGATTGGTCACCGCTTCAAAGATTTGGATTGACCATAATACATTGTATGATTGTCAAGATGGTTTGCTTGATGTAACACGAGGTTCCACTGATGTGACTATCTCTAATAATTGGTTTAAAAATCAAGATAAAGTTATGCTTCTTGGACACGATGATGGATATGTGAGAGACCAAAATATGAAGGTTACAGTAGTGTACAACCATTTTGGACCTAACTGTAATCAACGTATGCCAAGGATTCGCCATGGATACGCACATGTAGCCAACAATTTTTATCAAGGATGGCTTCAATATGCCATTGGTGGAAGCATGAAACCTAGTCTCAAAAGTGAAGCTAACCTCTTTGTAGCACCGTCAATAGGAAATAAGGAGGTAACATGGAGAAAGGGTAATGATAAAGGTGAAGATAGATGGAATTTTCATTCAATAAGGGACGTTTTTGAAAATGGAGCTTCCTTTAATGTAACAAAAGGAAGGGGTGTGCAGAAACCAAATTATAGCAAAGAACAAAATTTTATAGTTGTCGATGCCAAATTCGTGAGATTGTTGACACGTTCATCTGGTGTATTGCGATACAATAAAAATAATATATATTGA 1161 0.3738 MAFLEPRHLFLSCFIFFFLLNLSFAKQSKKNGLEMNVIDRCWRQNPEWRRHRSQLATCSVGYVGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKDMHIKLEKPLLISSFTTIDGRGVNIHIADSACLMIFKATNIIIHGIRVHHCKPQPPGIVMGPEGKVISLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNFYQGWLQYAIGGSMKPSLKSEANLFVAPSIGNKEVTWRKGNDKGEDRWNFHSIRDVFENGASFNVTKGRGVQKPNYSKEQNFIVVDAKFVRLLTRSSGVLRYNKNNIY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1044 386 PANTHER PECTATE LYASE 6 382 - -
Pvu4g1044 386 SUPERFAMILY Pectin lyase-like 76 342 IPR011050 -
Pvu4g1044 386 Gene3D - 35 379 IPR012334 -
Pvu4g1044 386 SMART amb_all 112 309 IPR002022 -
Pvu4g1044 386 Pfam Pectate lyase 122 303 IPR002022 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Pvu4g1044 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Pvu4g1044 386 PANTHER PECTATE LYASE 18-RELATED 6 382 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1044 Pvu-Chr4 28357428 28358900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1044 66 318 Polysaccharide Lyase AT5G09280 70.356 1.18e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1044 K01728 - gmx:100780437 640.188