Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1017 ATGCTGGGGGACTCGGCAGTGCTGGGAACAGGAGGAGGAGGAGGGTCTGGAGATGCAGTGGTGGCAGTAGGTGGGGGTGCTGCATCAGGAGGAGCTCATGACGGTGCTGTTGACGTGGCAGGCGGTGGTGGCGGCGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGGAACAGGTGGCCGAGGCAAGAGACTCTGGCTTTGTTGAAGATAAGGTCGGATATGGACGTGGCTTTTAGAGATGCAAGTGTGAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCATAAGAGAACCAAAGAAGGGCGAAGTGGGAAGACAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATCCATGCTATCCAATCCCCAACACCACCTTCAAAGCCACCACCAGTAACGACAACACCACTGCCAGCAACACCAGTGTCAATAGTAGTAACAACAACACCCTCTTCAATAATGTCTCTTCCCCCAACCACAACAGTGCCATTGCCACCCGTGTCTAATAACGCCACTGTTCCATCAACAACTACACTCCCTATCCCTCAAGCCATTCTCGCCCTCACAACCTCTTCCTACCCATCATCAAACCCTACAACATACTTCCCAACACAAACACCAAACCCTACAACCAACAACACCAACAACAAGAATCCACCTTCCTTCCCCAACATTCCAACTGATCTCTTGTCCAATTCCAGTTCTTCCTCCACCTCTTCCGAGGAAACAACAACGGAGGGAGGGGGAGCAAGACGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTCATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATAGAGAAGAGAGAACAAGAGCGTGTGACCAGAGAAGAATCGTGGAGAATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTGGCACAAGAGAGGTCCATTGCTGCGGCAAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAGCAAGAAGAAAATAATCTTCAGCCAGCATTGAATACCAACAACAACAACAGCATCACTATTGCTTCACAGCAACCGGTGCCACAAGCAACTCCAACACCAACACCACAACAAAAACAAACAACAACTGTTCCTGAGACCCCACCAGTGCAGTCCTTGGCCCCACAACCACAACAGCAGCAACATCAGGTGCAGCAACAGCAACAACTAGTGGTGACTAATGTGGAAATCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAATGGAGGTACAAGCACTGATAGATCTGAGAACAAACCTGGAAACAAAATACCAGGAAAATGGACCAAAAGGGCCACTGTGGGAGGAGATCTCATCGTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAAAGCAACAAGAAGAGGCCTGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTAGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCGCCCCTCATGGTGCAGCCGGAGCAGCAATGGCCTCCTCAGCAAGTGGTGCCACCAGAAATAACCATGGAAGACGCCCAGAATGATCCCATGGACGCGCGGAACCACGAGGATGCTGAGGAGGAGGAGGAGGACAAGGAAATAGCAGATGAAGATGATGATGAAGATGATGAAGGTGGTAGTTATGAGATAGTTGCAAGCAAGCCAGCTTCAGCTGGTGATGGTTCTGCTGAGTGA 1971 0.4952 MLGDSAVLGTGGGGGSGDAVVAVGGGAASGGAHDGAVDVAGGGGGGGSNSGDDERGRVEEGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKTEGKTYRFFDQLQALENNPAIHAIQSPTPPSKPPPVTTTPLPATPVSIVVTTTPSSIMSLPPTTTVPLPPVSNNATVPSTTTLPIPQAILALTTSSYPSSNPTTYFPTQTPNPTTNNTNNKNPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVTREESWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNNSITIASQQPVPQATPTPTPQQKQTTTVPETPPVQSLAPQPQQQQHQVQQQQQLVVTNVEINKADNNGENLMMGASSSRWPKMEVQALIDLRTNLETKYQENGPKGPLWEEISSLMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEITMEDAQNDPMDARNHEDAEEEEEDKEIADEDDDEDDEGGSYEIVASKPASAGDGSAE* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1017 656 CDD GT1 474 539 - -
Pvu4g1017 656 CDD GT1 68 133 - -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 236 288 - -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 236 298 - -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 1 69 - -
Pvu4g1017 656 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 646 - -
Pvu4g1017 656 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Pvu4g1017 656 PANTHER - 1 646 - -
Pvu4g1017 656 SMART sant 66 128 IPR001005 -
Pvu4g1017 656 SMART sant 472 534 IPR001005 -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 614 638 - -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 405 444 - -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 52 67 - -
Pvu4g1017 656 ProSiteProfiles Myb-like domain profile. 474 532 IPR001005 -
Pvu4g1017 656 MobiDBLite consensus disorder prediction 587 656 - -
Pvu4g1017 656 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Pvu4g1017 656 Pfam Myb/SANT-like DNA-binding domain 474 561 IPR044822 -
Pvu4g1017 656 Coils Coil 302 333 - -
Pvu4g1017 656 Gene3D - 476 537 - -
Pvu4g1017 656 Gene3D - 70 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1017 Pvu-Chr4 26529723 26533405 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1017 66 588 Trihelix Transcription Factor Family AT1G76890 46.812 7.00e-146 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu4g1017 Myb_DNA-bind_4 9.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1017 - - gmx:100804788 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1017 4 26529723 26533405 Pvu4g1017 4 26529723 26533405 ECH
Pvu4g1017 4 26529723 26533405 Pvu7g0820 7 7585480 7590170 PCT