Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1015 ATGCAGCCAGGAGACTCAAGTGTGCTGGAGATCTCCTCCCATAACGAGCCCGAGATGGCGGTGGCGGCGGAAGGAGCGGCACATGGTGGCGAGGTTGACGGTGGTGATGAGATGATTGGGATGGATGTGGATGCAATTTCTGGTGAAGGAAATGAAGGTAATAAGATGAGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTGTTTCGTGATTCAACTCTTAAAGGTCCACTATGGGAAGAAGTTTCAAGGAAACTTGCAGGGCTTGGATATGATCGAAGTGCAAAGAAGTGCAAGGAAAAGTTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAGAGCAAAAGTGGGAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAATCAGTTCACGATCTCTTACCCGCCAAAACCACAACCTACTTTAGCAACAACAAACACATTGACGTTGCCAGCTAGACAAAGTGATGTTGGTAACAACAATGTTATCTCTTATGTCACACCTTTTCCTTCCACAAACCCTACACTCATTTCTCCTTCACCACAAACCAACACCCCCACAATATCCACAAGAGATACATCACCACCACCACAAACCACCACTACCAACAACGACAATGTCACATATTCTTTGCCAAACATGAACACCCCTTTCTCAACCACCACCACCACCTCCACCTCTTCTTCCACAGCATCTGATGAAGACTTGGAAGAGAGGTACAGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTTTTGAAGCAGGAGGAAATGCAAAAGAAGTTCTTGGAAGCCATGGACAAAAGGGAGAGGGAAAGAGTGACACAACAAGACAATTGGAGGATGCAAGAAATGGCAAGGATTAATAGGGAACATGAGATTCTTGTTCAGGAAAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAAAAGATGTATGGCCAGCAAAACACCACACAACATGTCCAAGTACAGCCACCAGAACAACAGAAGCAAACAATGCTACAATCAGAGGCTCCAACACTAATGTCAAACAATAATCATTTTGAGATCAAGAAAATGAATAACGGTCACAGTGCTACCGGTATCAGCACTACTACTGTCACTACTTCTCCCGCTAGTTCTTCTAGATGGCCAAAGCCTGAAGTTCATGCTTTGATAAGGTTGAGGACAAGTCTTGACACCAAGTATCAAGAAAATGGACCAAAAGCTCCGTTGTGGGAAGATATATCAATTGCAATGCAGAGGCTTGGGTACAACCGGAGTGCAAAGAGATGCAAGGAAAAGTGGGAGAACATCAACAAGTACTTCAAAAAAGTGAGGGAGAATAACAAAGAAAGGCGTGAAAATAGCAAAACATGTCCTTATTTTCACGAGCTTGATGCTATATACAAGGAAAAGAGCTTATCCCAGAACCCCTTTGGCGTGTTCCAGAACATGAAGCCAAATGAGATGATGATGATGGAGCCATTGATGGTGCAACCGGAGCAACAATGGAGGCCTCCACCTCAATCGTTGGAAGAGGGTACAGAGAAGAACGGTAGTGAAGAATATCAAAAAAAAGAAGAAGAAAATGGTGATGGTGGTAATGATGATGATGATGATGATGTTGATGATGATGTTGAAGAAGATGAAGATGGTGTGGAAGATGAAGCGTGCGAGACTGGGACAAATAATTAA 1773 0.4399 MQPGDSSVLEISSHNEPEMAVAAEGAAHGGEVDGGDEMIGMDVDAISGEGNEGNKMSFGGNRWPRQETLALLKIRSDMDAVFRDSTLKGPLWEEVSRKLAGLGYDRSAKKCKEKFENVYKYNKRTKESKSGKSHGKTYKFFDQLQALENQFTISYPPKPQPTLATTNTLTLPARQSDVGNNNVISYVTPFPSTNPTLISPSPQTNTPTISTRDTSPPPQTTTTNNDNVTYSLPNMNTPFSTTTTTSTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAMDKRERERVTQQDNWRMQEMARINREHEILVQERSTAAAKDAAVIALLQKMYGQQNTTQHVQVQPPEQQKQTMLQSEAPTLMSNNNHFEIKKMNNGHSATGISTTTVTTSPASSSRWPKPEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRENNKERRENSKTCPYFHELDAIYKEKSLSQNPFGVFQNMKPNEMMMMEPLMVQPEQQWRPPPQSLEEGTEKNGSEEYQKKEEENGDGGNDDDDDDVDDDVEEDEDGVEDEACETGTNN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1015 590 CDD GT1 408 472 - -
Pvu4g1015 590 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 586 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 558 583 - -
Pvu4g1015 590 Gene3D - 63 124 - -
Pvu4g1015 590 Gene3D - 409 470 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 191 252 - -
Pvu4g1015 590 CDD GT1 61 126 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 541 557 - -
Pvu4g1015 590 Pfam Myb/SANT-like DNA-binding domain 407 494 IPR044822 -
Pvu4g1015 590 Pfam Myb/SANT-like DNA-binding domain 61 147 IPR044822 -
Pvu4g1015 590 PANTHER - 1 586 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 387 410 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 526 590 - -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 191 256 - -
Pvu4g1015 590 SMART sant 405 467 IPR001005 -
Pvu4g1015 590 SMART sant 59 121 IPR001005 -
Pvu4g1015 590 MobiDBLite consensus disorder prediction 387 408 - -
Pvu4g1015 590 ProSiteProfiles Myb-like domain profile. 401 465 IPR001005 -
Pvu4g1015 590 ProSiteProfiles Myb-like domain profile. 55 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1015 Pvu-Chr4 26419926 26422759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1015 58 530 Trihelix Transcription Factor Family AT1G76880 49.608 1.07e-136 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu4g1015 Myb_DNA-bind_4 2.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1015 - - gmx:100807507 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1015 4 26419926 26422759 Pvu7g0821 7 7629468 7632978 PCT