Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g1013 ATGTCCTTCCGCAGTATTGTTCGTGATGTGAGGGACGGGATTGGAAGCTTGTCAAGGCGGAGTTTTGACTTGAGGCTTCCTGGTGGCAGCAAGTCGAATAGTTCGGTCCACGAGGTGCATGAACGCCCTCTGGTCATACAGAACAGCCGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAGAAGATTGGAAGAAAGTGAGACAACATGGCCTGCTCGGAAGCACGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGGGCCATCCAGTGTTTTATCAAGAGAGACAAGTCTAATCTGACTTACCACCTATTCCTTTGTCTGAGTCCTGCTTTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACTTGCACAGAGTATACTATATCAATGGATGCGGACAACATATCGAGATCCAGTAACACTTACATCGGAAAACTGAGGTCCAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTACAACAATACTCAGCTGTCTCCTCCAGGTCGAAGCCGAAGGTTTAATTCCAAAAAGGTTTCTCCCAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGACCACGCAGGATGAACTGCAGCATGCACTCAATCCCTGTATCAGCCCTTGAGCCTGGTGGCACTGTGCCTGGCCAGCCAGAGCTTCTTCCCCGCTCTCTCGAAGATTCCTTCAGGAGCATATCCTTTGCTAGATCAATTTACAGCTCGACTGAGTTTAGCAGTTCTAGGTTCTCAGACATAGTTGTGGCAGGCAATGAAGAGGAGCAAGGAAAGGACATGCCTCTAGTTCTTAGAAACAAAGCACCACGATGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACAGTTGCATCTGTCAAGAATTTCCAGCTGATTGCTGCAACACAGCCGCCTGCAGCCGGTGCTCCTCCACCGCCGTCATCACAGCCAGCTCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAAGTTGGCAAGGACATCTTTACTATGGACTATAGATATCCCCTTTCTGCATTTCAGGCTTTTGCCATTTGTTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1278 0.4773 MSFRSIVRDVRDGIGSLSRRSFDLRLPGGSKSNSSVHEVHERPLVIQNSRWASLPPELLRDVIRRLEESETTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGAIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYTISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNTQLSPPGRSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCSMHSIPVSALEPGGTVPGQPELLPRSLEDSFRSISFARSIYSSTEFSSSRFSDIVVAGNEEEQGKDMPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPPPPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g1013 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 425 - -
Pvu4g1013 425 ProSitePatterns Ribosomal protein L34e signature. 16 29 IPR018065 -
Pvu4g1013 425 SUPERFAMILY F-box domain 47 95 IPR036047 GO:0005515
Pvu4g1013 425 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Pvu4g1013 425 SUPERFAMILY Tubby C-terminal domain-like 100 425 IPR025659 -
Pvu4g1013 425 Gene3D Tubby Protein; Chain A 108 425 IPR025659 -
Pvu4g1013 425 Gene3D - 46 98 - -
Pvu4g1013 425 PANTHER TUBBY-RELATED 1 425 - -
Pvu4g1013 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Pvu4g1013 425 MobiDBLite consensus disorder prediction 207 228 - -
Pvu4g1013 425 Pfam F-box domain 51 97 IPR001810 GO:0005515
Pvu4g1013 425 Pfam Tub family 112 420 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Pvu4g1013 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g1013 Pvu-Chr4 26005465 26010088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g1013 1 425 TUB Transcription Factor Family AT1G76900 69.281 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu4g1013 Tub 2.2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g1013 K19600 - gmx:100799499 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1013 4 26005465 26010088 Pvu4g1013 4 26005465 26010088 ECH
Pvu4g1013 4 26005465 26010088 Pvu7g0822 7 7667439 7671240 PCT