Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0988 ATGGCTGCTTCCACAATGGCTCTCTCTTCACCGTCACTGGCAGGCCAAGCCATCAAGCTTTCCCCTGCCACCCCCGACATCTCTGGTGGAAGGATTTCCATGAGGAAGACAGCCTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGTGAGGCCCCTTCCTACCTCACTGGCCAATTCCCAGGTGACTACGGCTGGGACACTGCTGGCCTTTCTGCTGACCCAGAGACTTTTGCCAAAAACCGTGAACTGGAAGTCATTCACTCCAGATGGGCTATGTTGGGAGCTTTGGGTTGTGTGTTCCCAGAACTCTTGGCCCGCAACGGTGTGAAGTTCGGAGAGGCCGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCTTAGTCCATGCACAGAGCATCCTTGCCATCTGGGCCACACAGGTGATCTTGATGGGTGCAGTGGAGGGTTATCGCATTGCTGGTGGGCCTTTGGGTGAGGTGACTGACCCAATCTACTCGGGTGGGAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCCTTTGCTGA 620 0.5629 MAASTMALSSPSLAGQAIKLSPATPDISGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGQFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYSGGSFDPLGLADDPEAFA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0988 206 Gene3D Chlorophyll a/b binding protein domain 55 206 - -
Pvu4g0988 206 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 1 206 - -
Pvu4g0988 206 Pfam Chlorophyll A-B binding protein 64 205 IPR022796 -
Pvu4g0988 206 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 206 IPR001344 GO:0009765|GO:0016020
Pvu4g0988 206 SUPERFAMILY Chlorophyll a-b binding protein 47 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0988 Pvu-Chr4 24845820 24846439 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0988 1 206 Chloroplast and Mitochondria Gene Families AT1G29930 85.167 2.34e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0988 K08912 - ccaj:109815895 404.831