Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0981 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGTTCAGGTGAGTTTATCCAGTTCACCGCGGATCACGGTGGCGGTGATGATGGTGAACATGGTTATGGAGATGGTGGTGGTGGTAGTGGTAGTGGTGGTGGTGGTTCACCAGGACTCAATTTTAACCAAGGGATGCAACAACAAGGGGAGGTAGCAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGGAAATGGTTTCAGCTTTGACACACGTTGTTTCATCAGGGTCTGGACAGAGGAGCACCGAATGGATGCAGCAAAGTGGTTATTCTATGATGTCAGGTTTTGGACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCTCCTTCTCCTACTTCTGGCCCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAACAGACTAATACCTCTTCTTCACATAACTTGATGCAACAACAAAGTGCTCCAAGACTCTTCAGAACCGTTGGTGACTTCATGCTGCCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACTACTGTAACAGCAGTCACAACGGCTGTTACTGAAACTACACCAGGAGGTGGAGAAAGGAGGAGAAAGTACAGGGGAGTGAGACAAAGGCCTTGGGGAAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGACACTGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTCCAAGCCGCCACAAGACTAACTGTTTCTGACTCTTCCACCTCTCAATTCCGGCCACTCACCGTGGCGGCACCACCCTTCGTTCAGCAGCCACAGATGCAGGGCTCCTCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGACTGATTTTCAACATCAGCATCAGCATCAGCATCAACAACAACCTTCTAATTTCCTTCAGCAGTTGTACTATAATGCACAATTGGCTTCACTTCAATCACCTTCATTCTCTTCTTCGGTGTCACCAACTCCATTACCATTATTCTCAACATCTGCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGCTATTTCCAGCCACTGGAGAGCCTCCCTCCAGCCGGTGGAAGGCCGGATATTCCGCCGTCAACATGGTCCGATGCCGGTGGCCAGCCACCATCTTCTGGTTGA 1308 0.4839 MSLLTVAYQRGSGEFIQFTADHGGGDDGEHGYGDGGGGSGSGGGGSPGLNFNQGMQQQGEVAMQGGSLVSGYNRGDPELREMVSALTHVVSSGSGQRSTEWMQQSGYSMMSGFGHAPSLSRLSSFSSPSPTSGPSGVGQKRGREEQQTNTSSSHNLMQQQSAPRLFRTVGDFMLPSQGDSSSVTEEAPTSTTTTVTAVTTAVTETTPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFQAATRLTVSDSSTSQFRPLTVAAPPFVQQPQMQGSSDLIRDYLQYSQLLQTDFQHQHQHQHQQQPSNFLQQLYYNAQLASLQSPSFSSSVSPTPLPLFSTSAQFSSASFPMFSSQQMSYFQPLESLPPAGGRPDIPPSTWSDAGGQPPSSG* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0981 435 SMART rav1_2 215 278 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 MobiDBLite consensus disorder prediction 118 160 - -
Pvu4g0981 435 CDD AP2 215 274 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 SUPERFAMILY DNA-binding domain 215 273 IPR016177 GO:0003677
Pvu4g0981 435 Gene3D AP2/ERF domain 214 274 IPR036955 GO:0003700|GO:0006355
Pvu4g0981 435 PANTHER DNA-BINDING DOMAIN 78 400 IPR044808 GO:0003700|GO:0009873
Pvu4g0981 435 MobiDBLite consensus disorder prediction 406 435 - -
Pvu4g0981 435 MobiDBLite consensus disorder prediction 18 53 - -
Pvu4g0981 435 Pfam AP2 domain 215 264 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 ProSiteProfiles AP2/ERF domain profile. 215 272 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 PRINTS Ethylene responsive element binding protein signature 238 254 IPR001471 GO:0003700|GO:0006355
Pvu4g0981 435 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 78 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0981 Pvu-Chr4 24438791 24441164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0981 152 275 AP2-EREBP Transcription Factor Family AT5G61890 53.226 2.41e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g0981 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0981 - - vun:114180418 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0981 4 24438791 24441164 Pvu4g0981 4 24438791 24441164 ECH
Pvu1g0867 1 14986698 14988815 Pvu4g0981 4 24438791 24441164 PCT
Pvu4g0981 4 24438791 24441164 Pvu7g0843 7 8065792 8067856 PCT