Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0969 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGAAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTTGATCCCTCCATAAAAAAGACTGAGTGGACAAGAGAAGAGGACGAGAAGTTACTTCATCTTGCTAAGCTCATGCCTACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACACCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTTCTTGATGCAGCCTGTGTAAAAGATGAGAACTATGAGCCTGGTGATGATCCTCGAAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGACCTGATCCTGTTGATATGGATGAAGACGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGAAAGAAAGCAAAAAGGAAGGCTAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCCTTACAAAAGAAGAGAGAATTGAAGGCAGCTGGAATTGATATCAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCATTCGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTGCAGATGAAGATAGACCAGTGGAACAGCCAAAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTTGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCTCCGTCTGCCATATTGCATGCCAACAAATTGAATGATCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATATCTGATCAGGAATTGGATGAAATTGCTAAGTTGGGTTATGCTAGTGACCTCGCAGGGAGTCAGGAACTTGCTGAAGGTAGTGGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCTGGACAAGGAGTGACTCCTTTGCGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTTGCCAGGTTAAGGGAGTCTCAAACACCATTGTTGGGAGGGGAGAATCCGGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAGGACATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGCATCACTCCAAGAATTGGTATGACGCCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTGAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGTACTAAACATGAACTGCAGAGACAGGCTGATATAAGAAGAAGTCTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCACGAATGAGTACCAAATAGTGATGGAACCAGTTACAGAAGATGCCGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCAAGACAGCAGGCACTACTTAGAAAACGATCAAAGGTCCTTCAACGGGAACTTCCTAGGCCCCCAGCTGCGTCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGATGGGGACAAGAGTTCCTTTGTTCCACCAACTTCTATTGAGCAGGCTGATGAGATGATTAGAAAGGAGCTTCTAACTTTACTGGAGCATGACAATGCTAAGTATCCGCTTGATGATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGTTCGGCAGACGTGTCTGCTGTCCCTGTGATAGAAGATTTCGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTTCAGTATCTTTGTGCAGCAATGGGACATGAAAATGAACCCCTTGATGAATTTATTGAAGCACATCGAACCTGCCTCCATGATCTTACGTACTTTCCTACGCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGCGAGAAACAAGTTGGATGATGATAAGGAGAAGATGGTACGTCTTGAGAAGAAGGTGACCGTTATCACACAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCACAAGCAGGAGCAATTAGCAGCATCGCAAAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAGTTGAAGAGCTGGAGAAGATGCAAAATACCATTAACCAATGCAGATTAAAAGCACAGCAGCAAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGGCCAATGAGAGCAAGGCGGATGAAACTGATGTGCTGGATACAGAGAGTTATAAAGTTGTACCTCACTCAGTAGAGGATGGAAATGCTCTAGCTGTAACAGTTGAGTCATCACATGATGCAACTGCTGACCAGCAAGAAGAGATTGTGCAAGACGGGTCTACTTCTAGCCCCAGTCAAGACATGAATGTGGATCCTGATAAAATGCATACAATACATGACACTGATGTTAAATTAGCAAAAGCTTCACCAGCTGCTGAGAATGTTGTTGAAATAGTGGAAGGTACTAGTCCTACTGATGGTAATACTGACAATGGGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCGCAATCATGATGTAGTTGCTAATGCTGTAAACACACGTGAGAGCAGCATGGAAGAAACCAGTGCTGTTACGGAGGAGACAAATTAG 2910 0.4378 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGQGVTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGITPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKHELQRQADIRRSLRSGLGSLPQPTNEYQIVMEPVTEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDDKVNKEKKKGVKRSADVSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLDEFIEAHRTCLHDLTYFPTRNAYGLSSVAGNMEKLAALQNEFENARNKLDDDKEKMVRLEKKVTVITQGYEMRAKKSIWPQIEATFKQMDIAATELECFKALHKQEQLAASQRINNLWSEVQKQKELEKTLQNRYGSLVEELEKMQNTINQCRLKAQQQKEIEANNAHAEANESKADETDVLDTESYKVVPHSVEDGNALAVTVESSHDATADQQEEIVQDGSTSSPSQDMNVDPDKMHTIHDTDVKLAKASPAAENVVEIVEGTSPTDGNTDNGENVSEMGASMEINSRNHDVVANAVNTRESSMEETSAVTEETN* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0969 969 CDD SANT_CDC5_II 55 106 - -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 113 149 - -
Pvu4g0969 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Pvu4g0969 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Pvu4g0969 969 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 796 - -
Pvu4g0969 969 Coils Coil 167 187 - -
Pvu4g0969 969 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Pvu4g0969 969 SMART sant 6 55 IPR001005 -
Pvu4g0969 969 SMART sant 58 105 IPR001005 -
Pvu4g0969 969 Pfam pre-mRNA splicing factor component 406 652 IPR021786 -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 868 885 - -
Pvu4g0969 969 Gene3D - 60 114 - -
Pvu4g0969 969 Pfam Myb-like DNA-binding domain 10 70 - -
Pvu4g0969 969 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Pvu4g0969 969 Coils Coil 680 714 - -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 859 886 - -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 399 415 - -
Pvu4g0969 969 Gene3D - 5 59 - -
Pvu4g0969 969 Coils Coil 780 814 - -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 382 444 - -
Pvu4g0969 969 MobiDBLite consensus disorder prediction 476 510 - -
Pvu4g0969 969 CDD SANT 10 53 IPR001005 -
Pvu4g0969 969 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0969 Pvu-Chr4 22929575 22936182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0969 1 833 MYB-Related Transcription Factor Family AT1G09770 75.805 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu4g0969 Myb_Cef 9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0969 K12860 - gmx:100801352 1594.33