Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0963 ATGAAAGGGAAGGGCAGAGAATTTATAGATTCAGCATCCTCATCGGTGCTCTCAAACGCACTTCAGCAGCGTCTTCAGTTCATTCTACAGACCCGTCCGGAGTGGTGGGTGTATGCCATATTCTGGCAAGCCACCAAAGAAAGCGACTCCCGTCTCACACTAGAATACGGCGACGGCTTCTATATGGGCTCAAAGGGCAGAGAGGGAACGGAAGTCAGAATGTCGGAGGAGCAAACGAGGAACCACGTGAACGATATCGAATGGTTCTACAGGGTGTCGCAAACTCGGTCCTATGCCGCCGGGGACGGTGTGGTCGGCTGTGCCTTCGGGTCGGGGGTGGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAAGTGAACGAGTGTGACGAGAGAGTGGGGGAAGCACGAAGGCACGGGATCCAGACTTTAGTGTGCGTGTCGGTGGCACGTGGGATCCTTGAGCTGGGTTCGCATGAGGTGCTGAAGCTGGATTATGGGGTTCTGCAAATGGTGAAATCGGTGTTTGAGGAGCGGGAGTGTGGGAGTGAGAATCCGGTGCGCAGGCGGTGGATGGTGGTTCCGGGGAAGGAGAAAGAGAAAGAGAGGAGAAGAGAGTTGGAGGGGTCATCGACGGACTCCTCAGGGCCTTCTGATCATGATGCGGAGGCTCTTTTGGCCTTTGTGGAAGCCAACAACAGCGTTCCCATGATGGGGAGAAGGGCGGGGAGAGAACGTGAGACGCTTCCCGTAAATCACGTGGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCCGCCGTCCCTAACGTCTCTAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATCAATGAACTGAAGGCCAAAATCAGCCAGCTGCAGTCTGCGTTGGAGGCAGAACCAGAAGCACAAGCACAAACACAAGCACAACCCTCCTCTGCAACTACTGACATGAGAGTCGAAGTCCAGATGTTGGGGTCGGAGGCCATGATAAGGGTGCAGAGCCTGAACATTAACCACCCCTGGGCTCGGTTAATGGATGCTCTGAGGGACGTGAATTTGGAAATTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTGGTTGTTAGGGTTCCCCATGACCTAATGACCCAAGAGGCCCTCCAAACTGCTATTATGCGCAGACTCTGA 1215 0.5416 MKGKGREFIDSASSSVLSNALQQRLQFILQTRPEWWVYAIFWQATKESDSRLTLEYGDGFYMGSKGREGTEVRMSEEQTRNHVNDIEWFYRVSQTRSYAAGDGVVGCAFGSGVDVWLSGVNEFEVNECDERVGEARRHGIQTLVCVSVARGILELGSHEVLKLDYGVLQMVKSVFEERECGSENPVRRRWMVVPGKEKEKERRRELEGSSTDSSGPSDHDAEALLAFVEANNSVPMMGRRAGRERETLPVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKAKISQLQSALEAEPEAQAQTQAQPSSATTDMRVEVQMLGSEAMIRVQSLNINHPWARLMDALRDVNLEILHATISNIKEMMLQDVVVRVPHDLMTQEALQTAIMRRL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0963 404 PANTHER MYC 16 404 IPR045084 GO:0003700|GO:0006355
Pvu4g0963 404 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 175 IPR025610 -
Pvu4g0963 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Pvu4g0963 404 MobiDBLite consensus disorder prediction 197 219 - -
Pvu4g0963 404 Pfam Helix-loop-helix DNA-binding domain 251 296 IPR011598 GO:0046983
Pvu4g0963 404 SMART finulus 253 302 IPR011598 GO:0046983
Pvu4g0963 404 Gene3D - 241 311 IPR036638 GO:0046983
Pvu4g0963 404 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 16 404 - -
Pvu4g0963 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 321 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0963 Pvu-Chr4 21751207 21752421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0963 13 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 33.803 8.20e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu4g0963 bHLH-MYC_N 7.7e-34 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0963 - K13422 pvu:PHAVU_004G090300g 757.288