Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0959 ATGGGAGGGACTCATGAACAAAGCCAAAACTTCTCCACCAACCCTTCCGACTACAAGCTTCTAGAAGAAGTTGGTTATGGCGCCACCGCCACCGTCTACAGAGCCATCTATCTTCCCTTCAACCAACTGGTTGCCGTCAAGTGCTTGGATCTCGATCGCTGTGACATCAATCTCGATGATTTGCGAAGGGAGGCGCAGACGATGAGTCTGGTCGATCATCCGAATGTGGTGAAGGCATACTGCTCCTTCGCGGTGGAGCGGAGTCTGTGGGTGGTGATGCAGTTCATGGACGAGGGCTCCTGTTTCCATCTCATGAAGACTGCGTATATGGAAGGGTTCGAGGAGGAGGCAATCAGATCCATCCTCAAAGAAACTCTGAAGGCCCTGCAGTACCTCCACCACCACGGCCACATTCATCGGGACGTCAAGGCCGGCAACATTTTACTCGGCAGCAGCGGCGCGGTCAAGCTCGCCGACTTCGGTGTTGCCACTTGCTTGTTCGACGCCGGCGACAGGCAGCGCGGCAGAAACACTTTTGTCGGGACCCCTTGCTGGATGGCTCCTGAGGTGCTGCAACCTTCAAGTGGCTATAATTCCAAGGCTGATATTTGGTCTTTTGGGATTACGGCACTAGAGTTGGCTCATGGTCATGCCCCGTTTTCAAAATACCCTCCAATGAAGGTTCTTCTAATGACTATACAGAATGCCCCTCCTGGACTTGATTATGACCGTGATAAGAAGTTCTCTAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTAGTGAAAGATCAAACAAAAAGGCCATCAGCAGAGAAGTTACTGAAACATTCCTTCTTCAAACATGTTAAGCCTCCCCAACTCTCTTTAAAAAAACTGTTTGCTGACTTACCACCTCTTTGGAATCGTGTAAAAGCCCTCCAGCTCAAAGATGCAGCTCAACTAGCAGTGAAGAAAATGCCTTCTGCAGAAGAAGAGGCAATATCTCAGAGTCAATACCAACGAGGAGTTAGCGCATGGAACTTTGATATTGATGATTTGAAAGCTCAAGCTTCATTGGTGAGGAATGATGATGATATTGCTGAGATGAGGGAAGAAGATGAAAACAATTTTTTCACCAATTACAAGGCTGGTGCAGTTGATTCCCAGTCTGGTAATGGAAAAATGAATTCAGAGAAATCAAAACTGAATAAGATCACATCACAGGTAGGGGCTATTGACATAAAAGAGACTGAGCAGAGTGAATACTTAAACAAAAACAAGAAGATTCCAGAAAGCGAAATCCAAGAACTTGGATTTCCCAAAAATATTTTTTGGGAAAGAAATGTGTCAACTTCGAAAGCAACAACATCTAATGTAGAGAAAGATATAATTATGACCAAAACTAAAGGCCAAATGGTAAAAAGCCGTCAAACCCATAGTGGACCACTGTTGCCAGTCACAATTCTCAATCATTCGAAATTAGAAAGGGAACGAATATCAACAAGGTACTTTATATTTTTTTGTATCATATCTTGTTTTATTTTAGACTCTAATTAG 1536 0.4453 MGGTHEQSQNFSTNPSDYKLLEEVGYGATATVYRAIYLPFNQLVAVKCLDLDRCDINLDDLRREAQTMSLVDHPNVVKAYCSFAVERSLWVVMQFMDEGSCFHLMKTAYMEGFEEEAIRSILKETLKALQYLHHHGHIHRDVKAGNILLGSSGAVKLADFGVATCLFDAGDRQRGRNTFVGTPCWMAPEVLQPSSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKHSFFKHVKPPQLSLKKLFADLPPLWNRVKALQLKDAAQLAVKKMPSAEEEAISQSQYQRGVSAWNFDIDDLKAQASLVRNDDDIAEMREEDENNFFTNYKAGAVDSQSGNGKMNSEKSKLNKITSQVGAIDIKETEQSEYLNKNKKIPESEIQELGFPKNIFWERNVSTSKATTSNVEKDIIMTKTKGQMVKSRQTHSGPLLPVTILNHSKLERERISTRYFIFFCIISCFILDSN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0959 511 CDD STKc_OSR1_SPAK 16 279 - -
Pvu4g0959 511 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0959 511 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Pvu4g0959 511 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 493 - -
Pvu4g0959 511 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0959 511 Gene3D Transferase(Phosphotransferase) domain 1 99 331 - -
Pvu4g0959 511 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu4g0959 511 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Pvu4g0959 511 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 493 - -
Pvu4g0959 511 Gene3D Phosphorylase Kinase; domain 1 6 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0959 Pvu-Chr4 21409395 21416392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0959 6 495 MAP Kinase Kinase Kinase Kinase AT4G24100 62.857 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Pvu4g0959 Pkinase 2.9e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0959 - - pvu:PHAVU_004G089900g 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0841 1 13381790 13389976 Pvu4g0959 4 21409395 21416392 PCT