Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0946 GTACTAGAACCAAGCCTTGCAAAGGGTAATAGGGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTAGTGAAAATCAGATTTCTAGTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACGGCTCGCATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAGAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTAGAAGGGACATTCCAATAACCCAAATCACAGAGCAGAAGGGAAAGGGTAGAAAAATGGTTCAAGTTTCAAAAGTGAAGGGCAAATTTGGTAGTCGTGCCAGTTCTGGGAATAATGGATCAGGTATAAAATCTGGTAAAGGGTCACCAGTGAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGAAAATCTTCTAGTACAAGTAGCACCATCAGAAAAGTTTCTTCAGAAAAGAGACAAACAAGTAAAGTGGTCCTCAGTAAAGGTTATTCAGAGAAGAGGAAAACAAGTAAAGCGGTGGGTGCCACCAAATCTACAAATTCTAAACTCAACGTTGTGGGGTTTCGGGGGAAAATTTCATCTTCAAATAACTAA 807 0.4089 VLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISSVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVARKDLDLASKIEEAIRKNESLEAITKESVRRDIPITQITEQKGKGRKMVQVSKVKGKFGSRASSGNNGSGIKSGKGSPVKSMKKGINVSKSGKSSSTSSTIRKVSSEKRQTSKVVLSKGYSEKRKTSKAVGATKSTNSKLNVVGFRGKISSSNN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0946 268 MobiDBLite consensus disorder prediction 169 252 - -
Pvu4g0946 268 Gene3D - 3 255 IPR027417 -
Pvu4g0946 268 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 181 - -
Pvu4g0946 268 Pfam Helicase conserved C-terminal domain 7 105 IPR001650 -
Pvu4g0946 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 140 IPR027417 -
Pvu4g0946 268 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 147 IPR001650 -
Pvu4g0946 268 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 1 181 - -
Pvu4g0946 268 SMART helicmild6 23 105 IPR001650 -
Pvu4g0946 268 MobiDBLite consensus disorder prediction 171 188 - -
Pvu4g0946 268 CDD SF2_C_DEAD 8 114 - -
Pvu4g0946 268 MobiDBLite consensus disorder prediction 201 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0946 Pvu-Chr4 20123115 20126591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0946 11 127 Eukaryotic Initiation Factors Gene Family AT3G19760 35.772 4.00e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0946 - - pvu:PHAVU_004G0886000 464.151