Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0945 ATGCAGCTTTTGTTTGGCTTGCAAAATTATCTTGATCCTGCAACCACTCTTATCAACAATGCTTCTGAAAGCACCTCTCTGTTATGTCACCCTAAAGCCTCCACACTTTGCATCGATGGCGGGAGCTACAGGAAGAACCATCTTCACCTTCTTCATCTCTTCCTCTTCTTCTTATTCTTCCTTCACGCGCTTCCTCGCCAAGCGCGTCCCACTCCGCAAACCCCTCCCCCTTTCCCCCGCCTCCGCCCCCTCTGCTCCGCCGCTGCTGCGCCGGAAACTGCCGACGCGAAGCATTCTTTACTCCTCCAGAGGCTCCGGGCGCGACACCTCAGGGATGCTGCGAGAGTCTCCCCCGAACCGAGGAAGAAGGCCAGGGTCGCCGCCGTGGCGGAGAAGGAGAAGGTGATTGCGACTTTCGAGGAGTTGGGAGTGAGTGAGGAAGTTATGGAGGTGGTTAGGGAAATGGGGATTGAAGTACCAACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGTTGCTACGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCTAGGCGTCCACGAGCGGTTGTGCTGTGTCCCACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTTAGGTGTACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAGCATATTGAAGAGGGAAACATGGTCTATGGTGACATCAAATACTTGGTATTAGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTAGGCCCATTAAATAGTCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATTTGCGCACATCAACATTGCATAAAAAGATTATTTCTGCTCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTGCAG 1158 0.4957 MQLLFGLQNYLDPATTLINNASESTSLLCHPKASTLCIDGGSYRKNHLHLLHLFLFFLFFLHALPRQARPTPQTPPPFPRLRPLCSAAAAPETADAKHSLLLQRLRARHLRDAARVSPEPRKKARVAAVAEKEKVIATFEELGVSEEVMEVVREMGIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLNSRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIISARHDFIKLSGSENKLEALLQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0945 386 Gene3D - 104 356 IPR027417 -
Pvu4g0945 386 SMART ultradead3 156 365 IPR014001 -
Pvu4g0945 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 70 386 - -
Pvu4g0945 386 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Pvu4g0945 386 Pfam DEAD/DEAH box helicase 161 344 IPR011545 GO:0003676|GO:0005524
Pvu4g0945 386 CDD DEADc 148 347 - -
Pvu4g0945 386 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 70 386 - -
Pvu4g0945 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 350 IPR027417 -
Pvu4g0945 386 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 355 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0945 Pvu-Chr4 20113508 20116521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0945 136 337 Eukaryotic Initiation Factors Gene Family AT3G19760 30.244 1.65e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0945 - - pvu:PHAVU_004G0886001 674.47