Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0940 ATGGATTTCTCTGAGGGTTATGTATCAAATGAGCATCGCGAGCTTCATCGATCTGCATCAGAAAGTGCGGATCCGTTGTCTGTTTCTCCATTGCAACTTGCTCCAAAATCTTCAAGGGCCCCTGACTCTCCTAGGTCTCCAAAATCTCCGAGGTCCCCAAAGGCGCCAGGCAAGTTGAGCAGTCTAAGTCCAAGGAGTCATAGACAATCACATTTTCAAAAAGATGGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAGGGTACCTGGGGTGGATTGCTTGATACAGATGACACAAGCGTTCTTGATCCTAATGATCCAAACTATGACAGCACTGAGGAATATGACCATTCAAATGAAAAGAAGCCGAACACAGAGCTTGAGAACTACAAGAAAAAGGCTATAATAATAGTGGAGGAATATTTTGCCACGGATGATGTTGTTGCAACAATGAATGAAGTTAAAGAGTTCGGAAAACCAGAGTATGGCTACTATTTTGTGAAAAAACTTGTCTCTATGTCCATGGACAGGCATGATAAAGAAAAAGAGATGGCTGCTATTCTGCTATCTGCACTTTATGCTGACGTATTTGATCCTTCACAAGTTTACAAGGGCTTCAGCAAATTAGTTGAATCAGCAGATGACTTGATTGTAGATATACCAGACGCAGTTGAAGTTCTAGCACTTTTCATAGCTCGGGCAGTGGTTGATGACATACTTCCTCCTGCCTTTTTGAAGAAACAGATGGCCTACTTACCGAAAGATTCAAAAGGGGTTGATGTCTTGAAAAAAACTGAGAAAAGCTATCTAGCAGCTCCTCTTCATGCAGAAATAATAGAGAGATGCTGGAGAGGTAGTAAGAACACCACAGTCGATGATGTTAAAGCTAAGATAAACAATTTTTTGAAGGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCTTTCAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCTCTTATAATGGCAATGGAGAGACGTCAAGCAGAATCCCCACTGTTAGATCTGTTGAAGGAAGCAGCTGAAGAAGGTTTCATTAACACTAGCCAAATGTCCAAAGGTTTCAGTCGGTTGATTGACACAGTTGATGACTTGTCACTTGATATACCGAATGCACGAGGAATACTGCAGCAACTGATATCTAAAGCAGCATCTGAGGGTTGGTTATGTGTGTCATCTTTGAAATCACTTTCAGTGGAGCCTGAAAGGAACTCAACAGAAGATAATGCTGCCAAAAGTTTCAAGGTAAAGACTCAGTCCATCATTCAAGAGTACTTCTTATCAGGTGATATATTGGAGGTAAATAGCTGTCTTGAACAAGAAAACAGCAAGAACTGTGCTGCACTCAATGCAATCTTTGTTAAGAAACTGATAACTCTGGCAATGGATAGGAAGAATAGAGAGAAGGAAATGGCTTCTGTGTTGCTGTCATCTCTGTGTTTCCCAGCTGATGATGTCGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGATACTGCTCTGGACAACCCAGTTGTTGTTGAGGATCTTGCTATGTTTCTAGCCAGAGCAGTGGTGGATGAAGTCCTGGCTCCACAACACCTTGAAGAGATTGGAACACAGTGTTTGGGGCCAGGTTCAATTGGGAGCAAAGTTCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTTGCAGGGGAGAGAATCTTGAGGTGTTGGGGTGGTGGGGGCAGTAGCAGGCCTGGATGGGCGTTTGAGGATGTCAAGGACATGATTGGGAAGCTGTTGGAGGAGTATGAGTCTGGAGGAGAAATAAAGGAGGCCTGTCGTTGCATGAAAGAGTTAGGAATGCCATTCTTCCATCATGAGGTTGTTAAGAAAGCTTTGGTGACAACCATTGAGAAGAAGAATGAGAGGTTGTGGGGTCTACTCAAGGAGTGTTTTGAATCAGGACTAATAACCATGAATCAAATGGTGAAGGGTTTTGGAAGGGTTGCAGAATCTCTTGATGACTTGGCCTTAGATGTCCCTGATGCTAAAAATCAGTTTGCATACTACGTTGAAAGAGCAAAGACCAATGGATGGTTGGACAACTCATTTTGTTTCAGCAAACAGGAACATGCAACAGCAGAGAATGGCACTCGCTAA 2172 0.4268 MDFSEGYVSNEHRELHRSASESADPLSVSPLQLAPKSSRAPDSPRSPKSPRSPKAPGKLSSLSPRSHRQSHFQKDGRPKKGGSGGKGTWGGLLDTDDTSVLDPNDPNYDSTEEYDHSNEKKPNTELENYKKKAIIIVEEYFATDDVVATMNEVKEFGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADVFDPSQVYKGFSKLVESADDLIVDIPDAVEVLALFIARAVVDDILPPAFLKKQMAYLPKDSKGVDVLKKTEKSYLAAPLHAEIIERCWRGSKNTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAESPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNARGILQQLISKAASEGWLCVSSLKSLSVEPERNSTEDNAAKSFKVKTQSIIQEYFLSGDILEVNSCLEQENSKNCAALNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPGSIGSKVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAFEDVKDMIGKLLEEYESGGEIKEACRCMKELGMPFFHHEVVKKALVTTIEKKNERLWGLLKECFESGLITMNQMVKGFGRVAESLDDLALDVPDAKNQFAYYVERAKTNGWLDNSFCFSKQEHATAENGTR* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0940 723 PANTHER PROGRAMMED CELL DEATH 4 1 715 IPR039778 GO:0045892
Pvu4g0940 723 SUPERFAMILY ARM repeat 592 710 IPR016024 -
Pvu4g0940 723 MobiDBLite consensus disorder prediction 1 20 - -
Pvu4g0940 723 SUPERFAMILY ARM repeat 122 286 IPR016024 -
Pvu4g0940 723 SMART ma3_7 596 705 IPR003891 -
Pvu4g0940 723 SMART ma3_7 428 539 IPR003891 -
Pvu4g0940 723 SMART ma3_7 293 404 IPR003891 -
Pvu4g0940 723 SMART ma3_7 129 240 IPR003891 -
Pvu4g0940 723 MobiDBLite consensus disorder prediction 1 124 - -
Pvu4g0940 723 MobiDBLite consensus disorder prediction 109 124 - -
Pvu4g0940 723 ProSiteProfiles MI domain profile. 128 249 IPR003891 -
Pvu4g0940 723 Gene3D - 416 571 - -
Pvu4g0940 723 Gene3D - 115 266 - -
Pvu4g0940 723 SUPERFAMILY ARM repeat 289 409 IPR016024 -
Pvu4g0940 723 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 715 - -
Pvu4g0940 723 Pfam MA3 domain 130 240 IPR003891 -
Pvu4g0940 723 Pfam MA3 domain 597 705 IPR003891 -
Pvu4g0940 723 Pfam MA3 domain 429 538 IPR003891 -
Pvu4g0940 723 Pfam MA3 domain 294 403 IPR003891 -
Pvu4g0940 723 ProSiteProfiles MI domain profile. 427 548 IPR003891 -
Pvu4g0940 723 ProSiteProfiles MI domain profile. 292 413 IPR003891 -
Pvu4g0940 723 ProSiteProfiles MI domain profile. 595 714 IPR003891 -
Pvu4g0940 723 MobiDBLite consensus disorder prediction 22 36 - -
Pvu4g0940 723 Gene3D - 278 411 - -
Pvu4g0940 723 Gene3D - 579 711 - -
Pvu4g0940 723 SUPERFAMILY ARM repeat 426 585 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0940 Pvu-Chr4 18601306 18604991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0940 603 705 Eukaryotic Initiation Factors Gene Family AT5G57870 33.019 1.70e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0940 - - gmx:102668745 1278.46