Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0900 ATGGATACAAACGGGAGTCTACGTGCCAACACCTGGGCGAGGTCGTCATCTTTAACCTCGGATCCCCTGTCATTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGACCCTTCAAATTCAGATTATGGGATCAGGGCAGAAGTACCTTTCAAAGAATTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCCTTGCAACTCAAACAATGAGATTGAGATCCCTAATCAAGAAAACTGTCATCTGAATGAATCTTCACAAACCAGTACACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTCATCAAAAAGGCGTTGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTCGTCACAACTGATCTTACATCAATCATCATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCATCTGTCAGGCACAACCTTGCAAATGCAGCCTCATTGTTTGGACAGATTGATCAGCTTCGTGGGACAACGGTTCCTTCTGGGACTGGTGGAAGTAGCAGCTGTATTCAGCCACAAAATAATGGTGCAAAAAAAGTGTCTGATCAGTCCATGCAAACTGATCTACCAAATAATTGTGAAATGGAGCCAAACTACAATATGGCAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTCTACAATTAGAGAAGGAAGAAATCCTTGCCCCTCATACCCATTTCTGTACAATTTGTGGCAAGGGGTTCAAGAGAGACGCAAATCTCCGAATGCACATGCGTGGTCATGGTGACGAGTACAAAACCCCAGCAGCTCTTGCAAAACCGCACAAAGATTCCGGGTCACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCCTATGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACAATAAAGGGGTAGCTGAGCCACCCAATCATGACAGCAAAGAAAACAGTAAGGTGGGGAATACGAACTTCACTTTTGGATCAAGTCCCTCAAATGGAAATGAAGTTGAAAATGGGATGGATGTAAAAGGCAATAATAGTGATGATCCTATTAGTTTTTTCTCTTCATTGAACTTTGACACCAGCTTTGGTGGGTTTAATGAATTCACTAGACCTCTATTTGATGACTCAGAAGGCTCATTCTCTTTTGTCATGCCCGGATCTTTCAAATCTGGAGGAGAATCGAGTGCTGACAATCTTTTGTAA 1539 0.4295 MDTNGSLRANTWARSSSLTSDPLSFPGFGLQNNQPKWDDPSNSDYGIRAEVPFKEFNQPSQTQSPLPCNSNNEIEIPNQENCHLNESSQTSTLQDWDPNVMLNNLSFLEEKIHQLQDLVHLIVHQKGVGQPNELVTQEQQLVTTDLTSIIIQLISTAGSLLPSVRHNLANAASLFGQIDQLRGTTVPSGTGGSSSCIQPQNNGAKKVSDQSMQTDLPNNCEMEPNYNMAEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKDSGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGVAEPPNHDSKENSKVGNTNFTFGSSPSNGNEVENGMDVKGNNSDDPISFFSSLNFDTSFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSADNLL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0900 512 MobiDBLite consensus disorder prediction 1 40 - -
Pvu4g0900 512 Gene3D Classic Zinc Finger 250 316 - -
Pvu4g0900 512 MobiDBLite consensus disorder prediction 1 41 - -
Pvu4g0900 512 MobiDBLite consensus disorder prediction 426 452 - -
Pvu4g0900 512 MobiDBLite consensus disorder prediction 185 212 - -
Pvu4g0900 512 MobiDBLite consensus disorder prediction 410 455 - -
Pvu4g0900 512 SUPERFAMILY beta-beta-alpha zinc fingers 264 291 IPR036236 -
Pvu4g0900 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 499 - -
Pvu4g0900 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Pvu4g0900 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 499 IPR044300 GO:0010044|GO:0010447
Pvu4g0900 512 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Pvu4g0900 512 SMART c2h2final6 314 347 IPR013087 -
Pvu4g0900 512 SMART c2h2final6 266 288 IPR013087 -
Pvu4g0900 512 SMART c2h2final6 352 374 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0900 Pvu-Chr4 14991035 14993886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0900 233 512 C2H2 Transcription Factor Family AT1G34370 67.568 1.13e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu4g0900 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0900 - - gmx:100500526 929.472