Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0887 ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAGCTTCTTCGACCAAATAGACGACCTCCTCGAATTCCCCGCCGAAGAAACAGCCGCCATTGACACTACTGCTGTCGCACCGCTCGCTCCTCCGACAAACTTCTGGTCCGCCGAGTCCGACTCGTTCCACGCCGCCAACGCGGTATTTTCCGGCAACACTGTGCCGGACCTCTCGACGGAGCTCTCTGTTCCGTATGAAGACATTGTACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGAAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAGGAGGACATAACTCATGCCCAATTCCAGACAGCAAGTCCAGTCTCAGTCCTTGAAAGCAGCAGTTTCTGTTCTGGGGAGAAGGCTGTACCTCGTAGCCCGGAGATTTTCATCCCCGTGCCATGTGGACGTGCACGCAGCAAGCGTGCACGTCCGACAGCCTTCAATCCCCATCCAGTGATGCAGCTGATCTCGCCGGCGTCTTCCACCGGCGAGAACACGCAGCACAACACCAGCACCTGCAAGGCCTCCTCAGACTCTGAGAATTTTGCCGAGTCCCCTATCAAGACACCAAAGCAGGCCTTTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCAGCAGGTCAAGACCAGAATGGTTCACCATCACAGGCAGTGAGGAAATGTGTGCACTGTGAGATAACCAAGACACCGCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCATGTGGCGTGCGCTACAAGTCAGGGCGGCTCTTCCCTGAATACCGGCCAGCTGCCAGTCCAACGTTCTGCGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGTCAGACACCAAATCTGGTTTTGCAGCAGATTCAGCTTCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA 1011 0.5321 MIGNFIDDIDCGSFFDQIDDLLEFPAEETAAIDTTAVAPLAPPTNFWSAESDSFHAANAVFSGNTVPDLSTELSVPYEDIVQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDITHAQFQTASPVSVLESSSFCSGEKAVPRSPEIFIPVPCGRARSKRARPTAFNPHPVMQLISPASSTGENTQHNTSTCKASSDSENFAESPIKTPKQAFGEHKKKKKIKVTFSAGQDQNGSPSQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKSDTKSGFAADSASSPELIPNTNSSLSLEYM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0887 336 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
Pvu4g0887 336 SMART GATA_3 236 286 IPR000679 GO:0006355|GO:0043565
Pvu4g0887 336 MobiDBLite consensus disorder prediction 176 203 - -
Pvu4g0887 336 PIRSF Txn_fac_GATA_plant 2 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu4g0887 336 PANTHER GATA TRANSCRIPTION FACTOR 1 336 - -
Pvu4g0887 336 Pfam GATA zinc finger 242 275 IPR000679 GO:0006355|GO:0043565
Pvu4g0887 336 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Pvu4g0887 336 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Pvu4g0887 336 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Pvu4g0887 336 PANTHER GATA TRANSCRIPTION FACTOR 8 1 336 - -
Pvu4g0887 336 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0887 Pvu-Chr4 14763895 14768999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0887 18 310 C2C2-Gata Transcription Factor Family AT4G32890 37.294 3.89e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu4g0887 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0887 - - gmx:100792644 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0887 4 14763895 14768999 Pvu7g0977 7 9922891 9926868 PCT