Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0868 ATGGAAATTCAGTTCCAACATCCAAAGCAGCACTTGAGACCAAAAATCAAAGGAAAAAACAACAAAAGCAAGAACAAGTATGTTGGAGTGAGGCAAAGGGCATCAGGGAAATGGGTTGCTGAGATCAAAGAAACAACACAAAAGATAAGAATGTGGCTTGGCACGTATGAGACAGCAGAAGAAGCAGCAAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCTAACACTCGCACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCACGGATTCAGAAGCTTCTCAACAACAGAAAAGACATCAAAGAACAAGAACAAGATGTGGAAAACTGTGCCACAAGGGTCAACACCAACCAACAGGAGTTGAATCTTGCAGAAGGAGTTACTACCCTACAAGATGAGAAACTAAGGTTCGAATCTTCGCTGGAAGAAGTGTCTATGTTTAGTGTCCAACCCTGTCTCCAACAAGATTGTCGTCAAAAGAAGATATATGTGAAAGATCAGAAGAAAAAAAGGGTTACCAGCACAACAAGGAGTGCTAGTGCTAGTGCCAGTAGTAGTACAAACACAAGCAACAGTGACACATGTGTGAACTCACTTTCGAGTGAGACAACAACCCAAAACACACAACTATTTGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGAGTCTGAGTCAGGTTCTCAGGAAAATCCTTCATGGGGTTCTGAACCCTTTTGTGATCATTTTCCCTTTGGCCAAGTAATGGATTTAGAAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGAACACTGTTCAAGACTCTAACAATGAAGCTATCTGGAATCTTACTCCCTTGTGTTCATTTTTGTGTTAA 954 0.4182 MEIQFQHPKQHLRPKIKGKNNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQKLLNNRKDIKEQEQDVENCATRVNTNQQELNLAEGVTTLQDEKLRFESSLEEVSMFSVQPCLQQDCRQKKIYVKDQKKKRVTSTTRSASASASSSTNTSNSDTCVNSLSSETTTQNTQLFDDAYRPDLSNFMESESGSQENPSWGSEPFCDHFPFGQVMDLENLPDIAGLELPEFERMKVERQISASLYAMNGVQEYMNTVQDSNNEAIWNLTPLCSFLC* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0868 317 MobiDBLite consensus disorder prediction 10 25 - -
Pvu4g0868 317 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pvu4g0868 317 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Pvu4g0868 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 303 - -
Pvu4g0868 317 MobiDBLite consensus disorder prediction 1 25 - -
Pvu4g0868 317 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pvu4g0868 317 Coils Coil 96 126 - -
Pvu4g0868 317 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Pvu4g0868 317 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Pvu4g0868 317 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Pvu4g0868 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 10 303 - -
Pvu4g0868 317 MobiDBLite consensus disorder prediction 174 217 - -
Pvu4g0868 317 CDD AP2 27 82 IPR001471 GO:0003700|GO:0006355
Pvu4g0868 317 MobiDBLite consensus disorder prediction 180 217 - -
Pvu4g0868 317 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0868 Pvu-Chr4 14013830 14015119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0868 8 101 AP2-EREBP Transcription Factor Family AT5G19790 69.149 3.56e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g0868 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0868 K09286 - gmx:100792432 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1161 1 30786425 30787261 Pvu4g0868 4 14013830 14015119 PCT