Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0849 ATGTCTGCACAGAACCCCCCACATGAGCAACCCCAAGAAGATGAAGTTGAATCAGATCAAAACCATTCGCTGAGCAACCTGGACAAAGACGAGAAGCATAGGGTTATAGGTTTGTCAGGATTGCAGTGTGCTGTCTGCCGAGGAATCATTCAAAATACAAGAACGCTGATGGAATGCTTTCATAAGTTTTGCAAAGAATGCATTGAGAAATCCATACGCCTTGGTGTCAATGAATGTCCTGTTTGTCATGTTCATGTTAGTCAATTGTCACTGAAAGAAGATCCACAATACGATGCTATAGTTTCTGCTATAGTGCCACAGATTGTCAAGTACAAAACACAGGAGGAAGTGGATCTGCTTTTGCTAGGGAAGACTAATGATAAAGAGACTATGACCAATGTCCGTGACAACAGGGCTAGGAATAGTCGCCTCTCCAAATTTATTGATCTTCTACGTAACTCTGATGTGAAGATTGATCAGCTGGAGATTCACCTTGAGCTTGTCTCTTTGGACGAGCAAAGGGCACCAAGTTTGCAGGAACCATATGTTGTGTGCAGGCCTAGCTGCACGGTGAAGACAGTGTGCAAGTATATTGAACGCAATGCAAAGATGCTGAGGAATCAAGTTGAATTATTCTTGATAGAAGAATCAGAAGCCAACGCTGTGAGTGGGAAGATAACAGTTGATGCAGACAAGGACAAATTGCGTGTTCTACGAGATGAAGAAACTTTGGCTGAACTATACACTCCAAATGTCACTCATTCTGCTCGTCTGCTCCTGGGTTATAAGATGAAGTAG 798 0.4286 MSAQNPPHEQPQEDEVESDQNHSLSNLDKDEKHRVIGLSGLQCAVCRGIIQNTRTLMECFHKFCKECIEKSIRLGVNECPVCHVHVSQLSLKEDPQYDAIVSAIVPQIVKYKTQEEVDLLLLGKTNDKETMTNVRDNRARNSRLSKFIDLLRNSDVKIDQLEIHLELVSLDEQRAPSLQEPYVVCRPSCTVKTVCKYIERNAKMLRNQVELFLIEESEANAVSGKITVDADKDKLRVLRDEETLAELYTPNVTHSARLLLGYKMK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0849 265 Pfam Zinc finger, C3HC4 type (RING finger) 42 82 - -
Pvu4g0849 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 112 IPR013083 -
Pvu4g0849 265 SUPERFAMILY RING/U-box 29 88 - -
Pvu4g0849 265 CDD RING-HC_RING1_like 43 82 - -
Pvu4g0849 265 PANTHER OS11G0578200 PROTEIN 133 265 IPR044592 -
Pvu4g0849 265 PANTHER OS11G0578200 PROTEIN 8 120 IPR044592 -
Pvu4g0849 265 PANTHER OS11G0578200 PROTEIN 133 265 - -
Pvu4g0849 265 PANTHER OS11G0578200 PROTEIN 8 120 - -
Pvu4g0849 265 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Pvu4g0849 265 ProSiteProfiles Zinc finger RING-type profile. 43 83 IPR001841 -
Pvu4g0849 265 MobiDBLite consensus disorder prediction 10 29 - -
Pvu4g0849 265 SMART ring_2 43 82 IPR001841 -
Pvu4g0849 265 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0849 Pvu-Chr4 13483156 13489440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0849 41 93 C3H Transcription Factor Family AT3G23060 38.889 2.38e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0849 K10695 - qsu:112040979 128.642