Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0848 ATGGACATGGATGTTTGCCGAAATGTATCAGTTTCTAGTGAGCTTCCCACCCTTGATGACCTTTTCTCACATCAGAACATGGAAGTGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTTTTGGCACCCACTGGTGTTCAAACCACAAGCACTAGCAGCAAGCCTTCGAGCACAATGCAAAGACCCCAACAAAGTTACTGTCATTTGCAGAATTTTGTTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCACCTAGGACAAAACACACTCTAAGCACATGGTCGCATAATTTTAGCTCTGAAGTGTTGTGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGCAAGAAGTGAAAGTGGAGATTGTGGTGAGGAAGGAGAAATTGGGGGAGTGTTGTGATGAGGTTGAAGTTAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCCAGAAGGTGCACACATTGTCTGTCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCCAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCTATCTTCTGAGAAGTAG 762 0.4514 MDMDVCRNVSVSSELPTLDDLFSHQNMEVDFGMEWLSVFVEDCFSSKPSCLLAPTGVQTTSTSSKPSSTMQRPQQSYCHLQNFVVPGKARSKRKRLSAPRTKHTLSTWSHNFSSEVLCSDPPLLKQAYWLADSELIVPKKKDEQEVKVEIVVRKEKLGECCDEVEVNNSSNNNNGQHPIPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVLSSEK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0848 253 ProSitePatterns GATA-type zinc finger domain. 183 208 IPR000679 GO:0006355|GO:0043565
Pvu4g0848 253 SMART GATA_3 177 231 IPR000679 GO:0006355|GO:0043565
Pvu4g0848 253 CDD ZnF_GATA 182 229 IPR000679 GO:0006355|GO:0043565
Pvu4g0848 253 Pfam GATA zinc finger 183 217 IPR000679 GO:0006355|GO:0043565
Pvu4g0848 253 ProSiteProfiles GATA-type zinc finger domain profile. 181 213 IPR000679 GO:0006355|GO:0043565
Pvu4g0848 253 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 250 - -
Pvu4g0848 253 PANTHER GATA TRANSCRIPTION FACTOR 3 250 - -
Pvu4g0848 253 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 241 - -
Pvu4g0848 253 Gene3D - 173 250 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0848 Pvu-Chr4 13455949 13457622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0848 33 245 C2C2-Gata Transcription Factor Family AT4G32890 40.909 1.20e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu4g0848 GATA 1.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0848 - - gmx:100776805 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1137 1 29814190 29815597 Pvu4g0848 4 13455949 13457622 PCT