Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0841 ATGGAGAATGACATGGAAGGTGTGCATTGGTGTAACATATGCTCTAAAATGGTGAACCCAATTAGTGATGCTGAGAACATATGCCCATTTTGCGAGACAGAGTTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGACTTGAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGTTTGATGGGTGCTTTCAGTCCTTCTCTAGCAAGGATTGCTCCACATGTAGGTAGCAGCTCAAGGGGGGAGGAAGAAGAGGTTGAGCAACAGATGGAAAATGAGCTTGTGCTTGGAAGAAGAAGAAGAACTTCATCCTACATGATGCATCTTTTCCGGGGACTTCATGTGAGGATGGTGTCTGAATTTGAAAACCTTGAAGACAATAGGAACATGGATAGCAGCAGCATACTTGTGATTGATCCATTCAATGAAGGCGCCCTTATTGTGAGAGGCCCTAACTTGAACCACACAAGTAGTCCAAATGAGAATAATGTAGTTGGAAGCTCCCTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTACTACAACACTTGGCACAGATTGGTCCTGGTGGGTATGCTAGTGTGAATCCTCCAGCACAGAAGGCAGCAATTGAAGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGGTCGGGATTGAGGCAAAGGAGATGCCATGCAAGCATAAGTTCCATGCTGATTGCATTGTCTCATGGCTCAAACTTCATGGTTCTTGTCCAGTATGCAGGTTTCAGATGCCATATGAGGATCCAAATGTTGAAGCCAATGTGGGAATTGGAAATGGCAATCAAAACAGTGAGATAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGTGCTGCAATCATTTAGCAATTTTCTTCCTTCTCCCTGA 966 0.4451 MENDMEGVHWCNICSKMVNPISDAENICPFCETEFSEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHVGSSSRGEEEEVEQQMENELVLGRRRRTSSYMMHLFRGLHVRMVSEFENLEDNRNMDSSSILVIDPFNEGALIVRGPNLNHTSSPNENNVVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAQKAAIEALPSVTSEEKLQCTVCLEDVEVGIEAKEMPCKHKFHADCIVSWLKLHGSCPVCRFQMPYEDPNVEANVGIGNGNQNSEIVRAGEERPRNGRRNWFPVLQSFSNFLPSP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0841 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 319 - -
Pvu4g0841 321 SUPERFAMILY RING/U-box 216 273 - -
Pvu4g0841 321 Pfam Ring finger domain 225 267 IPR001841 -
Pvu4g0841 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Pvu4g0841 321 SMART ring_2 226 266 IPR001841 -
Pvu4g0841 321 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 319 - -
Pvu4g0841 321 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0841 Pvu-Chr4 13320362 13321789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0841 90 285 C3H Transcription Factor Family AT1G26800 31.156 2.50e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0841 K11982 - gmx:100790855 590.882