Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0838 ATGTACTATCAGCAGCAGCAACAACCTAGAAACATGCATGCTTTAAGGATGAACAGCCCCACTGAGAGGCATATGATTATGCAAGGAGGCAATGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAATAATAAAATTGAAGCAACAGGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATAAATGATGCGTTACAGATGCAAATTGAAGTCCAAAGAAGACTGCATGAGCAGCTTGAGGTACAGCGGCACTTGCAGCTAAGAATAGAGGCACAAGGAAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCTGAGGGAGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTAGACACTAAATTTTCAGAACTAAAAGAATTACAGGGCCTGTGGCCTCATCAAACACAAGAGGGCCAGGCCACTGACTGTTCAATGGGTAGTTTCTTGACCTATAGTGAGGAATCTCAAAGAAACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTACAATGGACCTCCATTTTCAGTTTCGAAAGGTTGTGTGGAAGAGTCAGTGCATTTAAAGCCTGGTCTCACATTGAGTGAAGAAGTGAAGGAGAATATGATGTTTCTTTCCTCAACAAGTGATAGTAAAGTGGTGAAGGGAGATTTTTTACAAGAAAGGCCCTCAAGCCTCTTATCCATGAATGTTGGTGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGCTGGAAGGTAAGAGACAGCACTGAAACGGAGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTACAGACTATAGACTTGCAAACTTTGAAGTGAAACTAGATCTGAATTCCCATGATGCTAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1236 0.4094 MYYQQQQQPRNMHALRMNSPTERHMIMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATGRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQGLWPHQTQEGQATDCSMGSFLTYSEESQRNRETHNMSLNLIAYNGPPFSVSKGCVEESVHLKPGLTLSEEVKENMMFLSSTSDSKVVKGDFLQERPSSLLSMNVGVLEEEKFGRTTLSKEEGWKVRDSTETERMAVKLNHEKISTDYRLANFEVKLDLNSHDANDASSHCQQFDLNGFSWNC* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0838 411 Coils Coil 144 164 - -
Pvu4g0838 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Pvu4g0838 411 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 410 IPR044848 GO:0003700
Pvu4g0838 411 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 410 - -
Pvu4g0838 411 Pfam MYB-CC type transfactor, LHEQLE motif 142 188 IPR025756 -
Pvu4g0838 411 Gene3D - 44 102 - -
Pvu4g0838 411 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Pvu4g0838 411 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Pvu4g0838 411 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0838 Pvu-Chr4 13293051 13296214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0838 77 410 G2-like Transcription Factor Family AT3G04030 49.558 8.83e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu4g0838 Myb_DNA-binding 4.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0838 - - gmx:100786282 729.169