Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu4g0835 | ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTGGATTTAAAGAAAGCCGCGATGAAAGACGTTGATTTGGAAGCGGGTATGGCTGTTCCTCCCGATGTGGAACTAACCTCTTCCATAACCCACTTGGACACTGACATGGGCCTCTTCTTGGAAGAGGCTGAGAAGGTGAAGACGGAAATGGGGTCCCTCAGAGACATCCTCGGCAGCTTGCAGCAGGCCAACGAGGAGAGCAAGTCTCTGCACAAGGCCGAGGCGCTCAAGGCTCTCAGGGGCAGGATCAATGCCGACATTGTAGCAGTCCTAAAGAAGGCCAGGGTAATCCGGACCCAGCTCGAGGAGATGGACCGGGCCAACGCCGCCAATCGGAGGCTCTCTGGTCTGAAGGACGGCACGCCGGCCATCTACCGGACCCGGATCGCCGTTACCAATGGGCTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTTCAGGGGTTGAGACAGAGGATGATGAGTGAGTACAAGGATACTGTGGGGCGAAGGTACTTCACAGTGACTGGGGAGCACCCAGATGAGGAGGTGATTGAGAAGATCATTGCCAATGGTAATGAGGAAGAGGTTTTGGGGAAGGCGATTCAGGAACATGGGAGAGGGAAGGTTCTGGAAACGGTGGTGGAGATTCAGGACAGGCATGATGCTGCTAAGGAAGTGGAAAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCACGTGCTGCACGCTTCACACTATGTTAAGGATGGGAACAAGAATCTACAGAGTGCAAAGCATTACCAGAAGAGTAGCAGGAAGTGGATGTGTATTGGGATCATACTGCTGCTCATTCTTATTCTGGTTATTGTTATTCCTGTGGCCACCAGTTTAAGCAGTTCTTGA | 954 | 0.5199 | MNDLMTKSFTSYVDLKKAAMKDVDLEAGMAVPPDVELTSSITHLDTDMGLFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEALKALRGRINADIVAVLKKARVIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEHPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGNKNLQSAKHYQKSSRKWMCIGIILLLILILVIVIPVATSLSSS* | 318 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu4g0835 | 317 | CDD | SynN | 48 | 206 | IPR006011 | GO:0016020 | |
Pvu4g0835 | 317 | Gene3D | - | 215 | 314 | - | - | |
Pvu4g0835 | 317 | Pfam | Syntaxin | 51 | 254 | IPR006011 | GO:0016020 | |
Pvu4g0835 | 317 | PANTHER | SYNTAXIN | 5 | 310 | IPR045242 | - | |
Pvu4g0835 | 317 | SUPERFAMILY | t-snare proteins | 46 | 274 | IPR010989 | GO:0016020|GO:0016192 | |
Pvu4g0835 | 317 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 219 | 281 | IPR000727 | - | |
Pvu4g0835 | 317 | PANTHER | SYNTAXIN-RELATED PROTEIN KNOLLE | 5 | 310 | - | - | |
Pvu4g0835 | 317 | Gene3D | - | 44 | 173 | - | - | |
Pvu4g0835 | 317 | Coils | Coil | 144 | 164 | - | - | |
Pvu4g0835 | 317 | CDD | SNARE_syntaxin1-like | 218 | 279 | - | - | |
Pvu4g0835 | 317 | ProSitePatterns | Syntaxin / epimorphin family signature. | 225 | 265 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Pvu4g0835 | 317 | SMART | SynN_4 | 43 | 170 | IPR006011 | GO:0016020 | |
Pvu4g0835 | 317 | Pfam | SNARE domain | 256 | 307 | IPR000727 | - | |
Pvu4g0835 | 317 | SMART | tSNARE_6 | 214 | 281 | IPR000727 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu4g0835 | Pvu-Chr4 | 13225880 | 13227602 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu4g0835 | 1 | 317 | SNARE and Associated Proteins | AT1G08560 | 65.732 | 3.20e-135 | 384 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu4g0835 | K08486 | - | gmx:100816016 | 554.673 |