Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0830 ATGGGAACCCCACAATCCAACAACTTGCCACCAGGGTTTAGATTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAAAAGGTCGCCTCTATTCCTTTGGCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGTTACCAGCTAAGGCCGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCAAGAGATCGGAAGTACCCAAATGGAGCGAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCAACAGGCACTGATAAGAACATAGTAGCATCATTGGCAGGAGGAGTGAGAGAACATTTTGGTGTGAAGAAGGCTTTGGTTTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAAACCTGTTAGGATCAAAGACACTTCCATGAGATTGGATGACTGGGTTCTATGCCGGATATACAAAAAGTCCAAACACAGTCTATCTTCAATCACAGAGGCAGCACAGACAACTCTTGAGGAACAAATCAAAGACACCCTTTTACCAATCTCCAACACTACAACAACTCTTGTCCCTCCTCCACAGGCCACACTCATATCTCAAAAATCTCTATCATTCTCTAACCTCTTGGATGCCACAGACTTTTCCATGCTTAGCACCATCTTATCTGAGAACCAGTACTCCAATTACCCAAACACAAATGAACCTTTGTTCGGTTGTGAGAATCTGGATCATGAAACCCCACAAAACTACTACACCAACAACAATAGTTTTAATAATGTTCAGAAGAACCCTTCACTGATTACCCACATATTGCCCAAACACCACCTTTCAAACATAGATGAGGACATCATGCACCCTTCAAAGCAACACCATGGTTCCTCTTGCAATTTTCCAAACACCACCCTCCAAAATCAGAACCCCCAATGGAACTTCATGTTCAAGCAGCCTCACATGAATCACCAGCTACTTCCGGGTCCTCAATATCTTCAATTTCAGTGA 1032 0.4409 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLAVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLAGGVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDTNKPVRIKDTSMRLDDWVLCRIYKKSKHSLSSITEAAQTTLEEQIKDTLLPISNTTTTLVPPPQATLISQKSLSFSNLLDATDFSMLSTILSENQYSNYPNTNEPLFGCENLDHETPQNYYTNNNSFNNVQKNPSLITHILPKHHLSNIDEDIMHPSKQHHGSSCNFPNTTLQNQNPQWNFMFKQPHMNHQLLPGPQYLQFQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0830 343 PANTHER NAC TRANSCRIPTION FACTOR 56 5 221 - -
Pvu4g0830 343 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Pvu4g0830 343 PANTHER OS01G0104200 PROTEIN 5 221 - -
Pvu4g0830 343 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Pvu4g0830 343 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Pvu4g0830 343 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0830 Pvu-Chr4 13143100 13145054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0830 7 259 NAC Transcription Factor Family AT3G04070 59.108 3.99e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g0830 NAM 4.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0830 - - gmx:100817074 530.406