Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0825 ATGATGGAAGAACCAGTTGTGGTTAACAAAGGAGATGACCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTGCTGGATAGAGGTTTCAGTGCAACTGCTATTGGGGAAGCTGATTTTAACAAGTGCGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCCACTGGCATGAGAACCAATAGAGCAACACAATCTGGTTATTGGAAGGCCACAGGCAAGGACAAAGAGATTTACAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACTCTTGTGTTCTATAGAGGAAGAGCTCCAAAGGGAGAGAAGACAAATTGGGTTATGCACGAATTCAGATTGGAAGGCAAATTCGCATGTTACAATCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCATAAGAGCAACACAGATGTTAACAAAAGGGTACTCCCAATTAACCCTGGCATTGGCCTTCTTAGAATGAACTCAATTGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCACACAAACACATTGACAATGATTTCAAGGATACTACTAATAGTACTAACACACCTTCATCATCAGCAGCTAAACCACCTTCAGATGGCTATTACCTTCCCTATTTCATGAACAACAATCACCACATGCTGATGATGATGAAGCCTGAAGAACACAGAATCTATGAGACTCCTACCACCAACATTAACTATGCCTCCACCAGCCAAGGGAATTTCAACTCTAACAACCCAATGGCAATTGGCACAAGCAGTAACTCCCTTCAAAACTCAACCTCACCCTTCAACAATATGTTTCAAGATTATTGTATGCACCAAGGCAAAAACAGTTTCCAGCAGTTGAAGATGGAACAATTCTCCAACACTAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTACTGA 1188 0.4377 MMEEPVVVNKGDDPLDLPPGFRFHPTDEEIITCYLTEKVLDRGFSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKDEWVVCKVFHKSNTDVNKRVLPINPGIGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHKHIDNDFKDTTNSTNTPSSSAAKPPSDGYYLPYFMNNNHHMLMMMKPEEHRIYETPTTNINYASTSQGNFNSNNPMAIGTSSNSLQNSTSPFNNMFQDYCMHQGKNSFQQLKMEQFSNTNQPVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0825 395 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 346 - -
Pvu4g0825 395 MobiDBLite consensus disorder prediction 217 238 - -
Pvu4g0825 395 MobiDBLite consensus disorder prediction 224 238 - -
Pvu4g0825 395 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Pvu4g0825 395 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Pvu4g0825 395 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Pvu4g0825 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 346 - -
Pvu4g0825 395 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0825 Pvu-Chr4 12915932 12918015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0825 1 393 NAC Transcription Factor Family AT5G18270 48.371 2.25e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu4g0825 NAM 4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0825 - - gmx:100813376 610.142