Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0804 ATGGTGGAAGAGAATGAAGAAATAAAAACATTTAAGGATTTGGGTTTAGCTGAATCACTGGTTGAAGCTTGCGAAAAATTGGGTTGGAAAACTCCACTGAAGATACAGGCAGAAGCTATTCCTCTTGCATTGGAAGGAAAAGATGTGATTGGGCTTGCCCAAACTGGTTCTGGGAAAACAGGAGCTTTTGCTCTTCCTATATTGCATGCCCTCTTAGATGCACCTCGCCCAAAAGATTTCTTTGCTTGCGTGCTGTCTCCCACTAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTCTAGGTTCAGAAATCGGTGTGAAGTGTGCTGTGCTTGTTGGAGGAATTGACATGGTACAACAATCCATCAAGATAGCAAAGCAACCTCATATTATTGTTGGGACCCCTGGACGAGTTTTAGATCACCTAAAAAACACAAAAGGATTTTCTCTTAGTAGATTAAAATACTTGGTCTTAGATGAGGCAGATAGGTTGTTGAATGAGGACTTCGAGGAATCACTTAATGAGATTTTACAAATGATACCTCGTGAGCGGAGAACATTCCTGTTTTCTGCGACAATGACTAAGAAGGTGCAGAAGCTGAAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCATCTAAATATTCCACTGTTGACACATTGAAGCAGCAGTATCGTTTCTTGCCTGCCAAACACAAG 711 0.4121 MVEENEEIKTFKDLGLAESLVEACEKLGWKTPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQIAEQFEALGSEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLSRLKYLVLDEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLKRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0804 237 Gene3D - 1 218 IPR027417 -
Pvu4g0804 237 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Pvu4g0804 237 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Pvu4g0804 237 SMART ultradead3 28 228 IPR014001 -
Pvu4g0804 237 PANTHER RNA HELICASE 2 237 - -
Pvu4g0804 237 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Pvu4g0804 237 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Pvu4g0804 237 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Pvu4g0804 237 PANTHER BNAC02G41920D PROTEIN 2 237 - -
Pvu4g0804 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0804 Pvu-Chr4 12362940 12368011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0804 9 229 Eukaryotic Initiation Factors Gene Family AT3G13920 35.841 1.92e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0804 K14777 - gmx:100775796 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0804 4 12362940 12368011 Pvu4g0804 4 12362940 12368011 ECH