Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0779 ATGTCAGAGCCACATGATCTTAATACTAATGGTGGCGATCACAGTGCTGGATCAGGAAGCAGACGCAGAGGACCTGGTTTCAGACGTGCCATGGCAACACAAACACAAGATGAACCAATGCTGGGAACTTCGCCTGCAACGCCGTGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGCATTGGAGGCTGCATCTTTGCACCCCACTTTGGCACTGACCAAGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGGGCTAGCAATGTGTCAAAGCTCCTGTCCAACATTCCGGCCAACCGCCGCCATGAAGCGGCTACGACCATATCCTATGAGGCTCAGGCAAGGCTGTCTGATCCTGTTTACGGTTGTGTCTCCACCATCCTTTCTCTCCAACAACAGGTAGCATCTATGCAAGCAGAGGTAGCTATGGTGCAAACTCAGCTGATGAATAGTAGATTTGCCTATGCAAGTGCTCTTGAGAGCACACAAGTACAGCAACCAAACATGAATGCAGCAGCACTACAACCAGCATATTCCAACAACTCATGTGCTTCCACCAACCTTATGAACTTGAGCAGCTTCAACAATAACCCTGCTGGCTTTGACCTTGCAATGCACACAGCACCCTCATCAAGCACTTTAGAGCCTCTTCAACTAACAAGGCTGTCCAAATGTGAAGAAGATGAAGAAGAAGAAGAAAGCAGGACCCAGCCAGGCTTCAGCCACCATTAA 735 0.4966 MSEPHDLNTNGGDHSAGSGSRRRGPGFRRAMATQTQDEPMLGTSPATPCGACKFLRRKCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTILSLQQQVASMQAEVAMVQTQLMNSRFAYASALESTQVQQPNMNAAALQPAYSNNSCASTNLMNLSSFNNNPAGFDLAMHTAPSSSTLEPLQLTRLSKCEEDEEEEESRTQPGFSHH* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0779 244 Pfam Lateral organ boundaries (LOB) domain 48 146 IPR004883 -
Pvu4g0779 244 ProSiteProfiles LOB domain profile. 47 149 IPR004883 -
Pvu4g0779 244 MobiDBLite consensus disorder prediction 207 244 - -
Pvu4g0779 244 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 20 236 - -
Pvu4g0779 244 Coils Coil 128 148 - -
Pvu4g0779 244 MobiDBLite consensus disorder prediction 1 16 - -
Pvu4g0779 244 MobiDBLite consensus disorder prediction 1 27 - -
Pvu4g0779 244 PANTHER LOB DOMAIN CONTAINING PROTEIN 20 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0779 Pvu-Chr4 11301140 11304440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0779 47 232 AS2 family AT3G03760 59.898 1.04e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu4g0779 LOB 3.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0779 - - gmx:100813769 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0779 4 11301140 11304440 Pvu4g0779 4 11301140 11304440 ECH