Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0754 ATGCTTCCAACTAAAACTTTAACTCGTACTTTCCGCGTTCCATGGTTGGAACCCCAACAAAGCGACGTCGTTACGGGGACGGGCGTTCTCTTTCATTGCAAAACAATGCTGGATAGTGACTGGTATGTGGATCAGTCTCACCACGAGTTTCTCCAAAACGACGCGTTTTTGTTAAACTCTTTGGACTCTTCTTCGTCTTCTTCATTGCCGCAGCAGCACCATATGGTGCCGCAGAAGCCGAGTTTCTCCTCCTTCTTCGAGGCCAACGGGAACGGTTTTCTCGACGGTGGGTTTGATTTCGGTGAGGAGAGCTGTTTCTTAGCAAGTTTTTCGGGGAACGTGCCGAGTTTGAATGCCAAGTTTGCGGAGAGGCGTGACAGGGCAGCGGTGCGGTCTCTTTACGAGCTTTCTCCGCCCACTCTGTATCGGAAGCGGATGGAGCGCGGAGGTGGCCGAGAGGAGGAGGAAGGGTTGAATTATGAGTCTGATGAGTATGGGAAGTTGTTGGAGAATGTTTTTGATGCAAATGATAACGATGATAATGAGAACAGAGTTGGTGGTGGAGACCACAAGGGAAAGAAGAAGGGGATGCCGGCAAAGAATCTCATGGGTGAGAGAAGGCGGAGGAAGAAACTGAATGATAGGTTGTACATGCTTAGGTCTATTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCCATTGACTACCTGAGGGAGTTACTACAGCGGATTAATGATCTTCATAATGAACTAGAGACAAGCAAGCTTGACTCATCCCTTCCACCTTCTGCTAGTTTTCACCCTGTGACACCCACAGTGCCTACCCTTCCCTGCCGGGTGAAGGAAGAACTATGTGCTACCACTCTGCCAAGTCCTAAACATCAATCAACGAAGGTATTTGTTTGTCACAGTGCAAAATTGTATTTCTTCCCTGTCAGTTGA 957 0.4838 MLPTKTLTRTFRVPWLEPQQSDVVTGTGVLFHCKTMLDSDWYVDQSHHEFLQNDAFLLNSLDSSSSSSLPQQHHMVPQKPSFSSFFEANGNGFLDGGFDFGEESCFLASFSGNVPSLNAKFAERRDRAAVRSLYELSPPTLYRKRMERGGGREEEEGLNYESDEYGKLLENVFDANDNDDNENRVGGGDHKGKKKGMPAKNLMGERRRRKKLNDRLYMLRSIVPKISKMDRASILGDAIDYLRELLQRINDLHNELETSKLDSSLPPSASFHPVTPTVPTLPCRVKEELCATTLPSPKHQSTKVFVCHSAKLYFFPVS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0754 318 Coils Coil 242 262 - -
Pvu4g0754 318 Gene3D - 191 261 IPR036638 GO:0046983
Pvu4g0754 318 SMART finulus 202 251 IPR011598 GO:0046983
Pvu4g0754 318 MobiDBLite consensus disorder prediction 176 198 - -
Pvu4g0754 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Pvu4g0754 318 CDD bHLH_AtAMS_like 199 271 - -
Pvu4g0754 318 PANTHER BHLH TRANSCRIPTIONAL FACTOR 156 306 - -
Pvu4g0754 318 Pfam Helix-loop-helix DNA-binding domain 205 245 IPR011598 GO:0046983
Pvu4g0754 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 263 IPR036638 GO:0046983
Pvu4g0754 318 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 156 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0754 Pvu-Chr4 10599717 10601311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0754 154 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 67.308 1.15e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu4g0754 HLH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0754 - - pvu:PHAVU_004G070200g 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0885 1 15261013 15264731 Pvu4g0754 4 10599717 10601311 PCT