Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0752 GTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGTCGTACTAAATAG 234 0.4274 VNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0752 77 MobiDBLite consensus disorder prediction 27 77 - -
Pvu4g0752 77 SMART Ribosomal_L2_C_2 1 54 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pvu4g0752 77 MobiDBLite consensus disorder prediction 57 77 - -
Pvu4g0752 77 PANTHER RIBOSOMAL PROTEIN L2 1 75 IPR002171 GO:0003735|GO:0005840|GO:0006412
Pvu4g0752 77 ProSitePatterns Ribosomal protein L2 signature. 19 30 IPR022671 GO:0003735|GO:0005840|GO:0006412
Pvu4g0752 77 Gene3D Ribosomal protein L2, domain 3 1 76 IPR014726 -
Pvu4g0752 77 SUPERFAMILY Translation proteins SH3-like domain 3 74 IPR008991 -
Pvu4g0752 77 PANTHER 50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC 1 75 - -
Pvu4g0752 77 Pfam Ribosomal Proteins L2, C-terminal domain 2 52 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0752 Pvu-Chr4 10549261 10549677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0752 8 36 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 62.069 2.65e-06 41.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0752 K02886 - pvu:PHAVU_004G0700000 166.777