LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu4g0752	GTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGTCGTACTAAATAG	234	0.4274	VNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK*	78

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu4g0752	77	MobiDBLite	consensus disorder prediction	27	77	-	-
	Pvu4g0752	77	SMART	Ribosomal_L2_C_2	1	54	IPR022669	GO:0003735\|GO:0005840\|GO:0006412
	Pvu4g0752	77	MobiDBLite	consensus disorder prediction	57	77	-	-
	Pvu4g0752	77	PANTHER	RIBOSOMAL PROTEIN L2	1	75	IPR002171	GO:0003735\|GO:0005840\|GO:0006412
	Pvu4g0752	77	ProSitePatterns	Ribosomal protein L2 signature.	19	30	IPR022671	GO:0003735\|GO:0005840\|GO:0006412
	Pvu4g0752	77	Gene3D	Ribosomal protein L2, domain 3	1	76	IPR014726	-
	Pvu4g0752	77	SUPERFAMILY	Translation proteins SH3-like domain	3	74	IPR008991	-
	Pvu4g0752	77	PANTHER	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	1	75	-	-
	Pvu4g0752	77	Pfam	Ribosomal Proteins L2, C-terminal domain	2	52	IPR022669	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu4g0752	Pvu-Chr4	10549261	10549677	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu4g0752	8	36	Cytoplasmic Ribosomal Protein Gene Family	AT3G51190	62.069	2.65e-06	41.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu4g0752	K02886		-	pvu:PHAVU_004G0700000	166.777

Showing 1 to 1 of 1 entries