Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0750 ATGAGTTCCAACCAAAACACCACCTTCTTCCCCACCCCACATGGTCAAATAACCAGTACTTCTAAATTTATTAATAGCCAGGATCCATCTCAAGCTACAACAAATCAAGGTAATGCTGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCCATGGCTTATGATGTTGCGGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAACGTGTTGCTGTGCCACTACCACCACCAACCAACAACACCACTTCTTCAGCTTCTGCACAACCCTCTTCCCTCACACCACCACATCTTGGTGGCCATCATCAAACTCTACAAACTAGTGGCAGTAGTTCTCTTGTAGTGTCACCAACATCAGAAGAAGCAGAAGGGTTTCCGAGTCTGATGGAGTATGCACGGTTGCTGAAGTGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGAACTTCTCTATGGTTCTTCTCAGCCACCACCTGTGCCATTTTTTCTGTCTTCTTCGTCTTCTTCTACATTTGCATCTTCAACTTCTCAGGGTGATGTTGGAGGCTATGGTTCTTCTGGATTCTATAGTCATGGAGGGACTGGTTTTGATGCAGGGAACACGAGGGGATCATAG 747 0.4605 MSSNQNTTFFPTPHGQITSTSKFINSQDPSQATTNQGNADIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPLPPPTNNTTSSASAQPSSLTPPHLGGHHQTLQTSGSSSLVVSPTSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEELLYGSSQPPPVPFFLSSSSSSTFASSTSQGDVGGYGSSGFYSHGGTGFDAGNTRGS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0750 248 MobiDBLite consensus disorder prediction 110 152 - -
Pvu4g0750 248 MobiDBLite consensus disorder prediction 1 42 - -
Pvu4g0750 248 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Pvu4g0750 248 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Pvu4g0750 248 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 15 226 - -
Pvu4g0750 248 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Pvu4g0750 248 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Pvu4g0750 248 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Pvu4g0750 248 MobiDBLite consensus disorder prediction 1 39 - -
Pvu4g0750 248 PANTHER DNA-BINDING DOMAIN 15 226 IPR044808 GO:0003700|GO:0009873
Pvu4g0750 248 MobiDBLite consensus disorder prediction 105 153 - -
Pvu4g0750 248 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Pvu4g0750 248 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Pvu4g0750 248 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0750 Pvu-Chr4 10524334 10526517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0750 25 148 AP2-EREBP Transcription Factor Family AT5G61890 57.937 7.07e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu4g0750 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0750 - - gmx:100796480 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0750 4 10524334 10526517 Pvu1g0867 1 14986698 14988815 PCT