Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0724 ATGACTGATTCTCACCCCAATCACAATGACCCATCTCTCGCTACCGAGGCTGATGCACCTGAAGATGCTGGAGAAGGAGAAGATGTCAAGTTGAGGTCTAGGGACCAAAGACTGGCTCTGCAAGGTGAGCCCAAGTGTGTTATATGTGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAAGCACTGCTTTGCAGAATTGCCAAATCATTGGCTCCCTTTGGAAGTCTTCTGCCACCAGAAAAGATTCCTATTGCTGATGAATGCTTTTATGTTAGTGATGCTGATAACAAATCAGGGACTGCACCTATGGCTAGTGATCTTAGAACGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTTCCTGACAAGCTACTCCACAATATAGAAGCAGCAGGATATTACATGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACGGGAAAAAACGTGCTCGTTTTGGCCAATACGGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCAATAGTTTCTCGTTGTGTGATTCATCGCCGGCAATATGTTTCAGAGAAGAAGCCTTTGGTTATGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAACATGCTAAGATGCTTGGCAAGGGTTTGCCTTTCAAAACTGCACTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCTATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGACTTGTTGATCTTCTAATGAAGCATGAAATTGACTTAGATGATGTGATGACTTTCGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGAAGATATATAGGGCGTTGTCACAACCCCAGGTCTTGATGTATTCTGCGACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACAGTGGTCATCTCTGTTGGAGAACCTAATAGAGCGAATAAGGCTGTGAAACAGCTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAGTTGTTTGACATTTTGGCAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGCTCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATCACAGTTGCCACCGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAATCTTTTTGTATGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGGGGGATAGATCTGTTGGGTGTAAGACAGGTGATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTGCATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAATAAAAATGTGTTTGCAGACTTAATCGATGTTTTGAAATCTGGTGGGGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACACCACAGGATTTTTCTCTGGCGGGAAGGCTTCGAAAAAGAGAAAGAATACAAGATGA 1605 0.4405 MTDSHPNHNDPSLATEADAPEDAGEGEDVKLRSRDQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQALLCRIAKSLAPFGSLLPPEKIPIADECFYVSDADNKSGTAPMASDLRTKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYYMPTPVQMQAIPAALTGKNVLVLANTGSGKSASFLIPIVSRCVIHRRQYVSEKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLMKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMKIYRALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNRANKAVKQLAIWVESKQKKQKLFDILATKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFCMGEVPVVVATGVLGRGIDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFADLIDVLKSGGAAVPRELANSRYTTGFFSGGKASKKRKNTR* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0724 534 Gene3D - 26 81 - -
Pvu4g0724 534 Gene3D - 103 341 IPR027417 -
Pvu4g0724 534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 515 IPR001650 -
Pvu4g0724 534 Pfam HIT zinc finger 44 70 IPR007529 -
Pvu4g0724 534 SMART helicmild6 394 476 IPR001650 -
Pvu4g0724 534 SMART ultradead3 154 356 IPR014001 -
Pvu4g0724 534 Gene3D - 342 517 IPR027417 -
Pvu4g0724 534 Pfam Helicase conserved C-terminal domain 366 476 IPR001650 -
Pvu4g0724 534 CDD SF2_C_DEAD 353 485 - -
Pvu4g0724 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 490 IPR027417 -
Pvu4g0724 534 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 135 163 IPR014014 GO:0003724
Pvu4g0724 534 Pfam DEAD/DEAH box helicase 159 329 IPR011545 GO:0003676|GO:0005524
Pvu4g0724 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 343 IPR027417 -
Pvu4g0724 534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 341 IPR014001 -
Pvu4g0724 534 MobiDBLite consensus disorder prediction 1 34 - -
Pvu4g0724 534 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 518 - -
Pvu4g0724 534 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 27 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0724 Pvu-Chr4 9700676 9703243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0724 136 496 Eukaryotic Initiation Factors Gene Family AT1G72730 32.787 3.86e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0724 K19466 - gmx:100784491 919.842