Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0701 ATGCCTAACTATTTAAATCACTCAACACCTCCCGTATCGAAGTCACATCACAAGCGTTATGAGCGCTGGACAGAAAATGAACATAGGTTATTTCTTATTGGACTCCAAAATTGTAGCCCAGGAGATTGGAAAAGCATTTCAAAACGTTACATTCCATCAAAAACTTCAACTCAAATTGCAAGTCACGCTCAAAAGTATATGCATTATCAAAATGGCCTAAAGAAAAATAAGAAGAGAAAAAGTATCCACGACGTAACCCTAGATGACATTAACACTAGTGTTGTTCCTAGTTTCATTAATCAAGAACAATGA 312 0.359 MPNYLNHSTPPVSKSHHKRYERWTENEHRLFLIGLQNCSPGDWKSISKRYIPSKTSTQIASHAQKYMHYQNGLKKNKKRKSIHDVTLDDINTSVVPSFINQEQ* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0701 103 Gene3D - 20 74 - -
Pvu4g0701 103 Pfam Myb-like DNA-binding domain 22 66 IPR001005 -
Pvu4g0701 103 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 92 - -
Pvu4g0701 103 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 92 IPR043363 -
Pvu4g0701 103 CDD SANT 22 67 IPR001005 -
Pvu4g0701 103 SMART sant 19 69 IPR001005 -
Pvu4g0701 103 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 67 IPR006447 GO:0003677
Pvu4g0701 103 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Pvu4g0701 103 SUPERFAMILY Homeodomain-like 17 71 IPR009057 -
Pvu4g0701 103 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0701 Pvu-Chr4 9242301 9242923 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu4g0701 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0701 - - pvu:PHAVU_004G065400g 220.32